Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02556 ATGGCTGCTCTCGGGGACGACGAACTAGGCCAAATCCTCAAGTTGATTCGTTGTCATGGTGATAGAAAAGCCTTCTCCCTTGTTTGCAAGCAATGGATGAGAGTGGAGGGGCTAATACGATCATCAATTCGAGTATTCGAATCCGATTATCTCCGTCGTCTGTTACCTAGATTCCCTAATTTGGTTTCTTTCGAATCATCCACTTTTATCGCTGACGATCAGCTTCAGTTCTTGGCTGAGACGTGCCCTAAAATCGAGGTTGTCATCCTGAATTTCAAGAAACCGCGCGGAAATTATGATGGATTTGTTGAGCCATCGGATTTCGATGGGGTTGGGGACAAGGGAATTATCGCCTTGGCGAATGGATGTCTCAGCTTGAAGAAAGTTTTGCTGAGAAGGAGAAAGAAAATTGGCGATTTCGGAGTTTCCTCTCTCGCGAAAATTTCTCGGAATTTGACATACTTGGATTTGGGGGGGTGCAATTTGATCACCGACCAGTCGCTGAAAGCGATTAGTTCTCTCAATTCGATTAAGACGTTGAATCTGCAAGGGTGTTCGTTGATTACGGATGAGGGATTGGGTTTTCTGGCAACTGGATCTTCCTCGAGGAGCATGAAAAGGCTGTTTATTTCAGAGTGTGATCGAGTAACTGATAAAGGAGTGTCGCTTTTCCAGCAAATGAGTTGCCTGGAGGAGATAAACTTATCAGATTGCGGGCCAAAAATCACAGACATTGGAGGTGTAGCTCTTGCCGCCATTCCAGCTCTCAAAAGATTAAACATGGCGTGGTTGATCAACGTTTCCGATTCAACAATCGTAGCGCTGGCGGAGAATTGCAGGAGCTTGAAGGCAATGGATTTAACAGGTTGCGAACTGGTAAGCGGAGCCGGAATCAAGGCATTCAGCGGCCATGGGAGCTTAGAGGAGCTTGTGATGGCTTCATGTTTCAACATCAACGGGGATGACATAGAGCAGACGGTGCTCGGCTGCCGGACTCTGAAACACATTGTGATGGAGAAAGGGCTGAGAATGTGGATTCCGAATCAAATGATTGAAAACTTGAGCAGATTCTGCGACTTCCATTGGCGATGA 1092 46.43 MAALGDDELGQILKLIRCHGDRKAFSLVCKQWMRVEGLIRSSIRVFESDYLRRLLPRFPNLVSFESSTFIADDQLQFLAETCPKIEVVILNFKKPRGNYDGFVEPSDFDGVGDKGIIALANGCLSLKKVLLRRRKKIGDFGVSSLAKISRNLTYLDLGGCNLITDQSLKAISSLNSIKTLNLQGCSLITDEGLGFLATGSSSRSMKRLFISECDRVTDKGVSLFQQMSCLEEINLSDCGPKITDIGGVALAAIPALKRLNMAWLINVSDSTIVALAENCRSLKAMDLTGCELVSGAGIKAFSGHGSLEELVMASCFNINGDDIEQTVLGCRTLKHIVMEKGLRMWIPNQMIENLSRFCDFHWR 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83230618 83231709 - Bma003438.1 Bma01g02556 77073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02556 363 Pfam Leucine Rich repeat 278 302 IPR001611 GO:0005515
Bma01g02556 363 Pfam Leucine Rich repeat 175 197 IPR001611 GO:0005515
Bma01g02556 363 Pfam Leucine Rich repeat 228 251 IPR001611 GO:0005515
Bma01g02556 363 Pfam Leucine Rich repeat 149 172 IPR001611 GO:0005515
Bma01g02556 363 SMART LRR_CC_2 229 253 IPR006553 -
Bma01g02556 363 SMART LRR_CC_2 175 199 IPR006553 -
Bma01g02556 363 SMART LRR_CC_2 202 227 IPR006553 -
Bma01g02556 363 SMART LRR_CC_2 123 148 IPR006553 -
Bma01g02556 363 SMART LRR_CC_2 254 278 IPR006553 -
Bma01g02556 363 SMART LRR_CC_2 149 174 IPR006553 -
Bma01g02556 363 SMART LRR_CC_2 279 304 IPR006553 -
Bma01g02556 363 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 2 337 - -
Bma01g02556 363 SUPERFAMILY RNI-like 111 337 - -
Bma01g02556 363 PANTHER OS03G0633100 PROTEIN 2 337 - -
Bma01g02556 363 Gene3D Ribonuclease Inhibitor 62 185 IPR032675 -
Bma01g02556 363 Pfam F-box 5 41 IPR041567 -
Bma01g02556 363 Gene3D Ribonuclease Inhibitor 197 357 IPR032675 -
Bma01g02556 363 Gene3D - 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02556 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - qsu:112029922 429.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02556 Bma-Chr1:83230618 Bma10g00351 Bma-Chr10:3282296 1.83E-07 dispersed
Bma14g00633 Bma-Chr14:6792083 Bma01g02556 Bma-Chr1:83230618 3.21E-11 dispersed
Bma01g02556 Bma-Chr1:83230618 Bma08g00842 Bma-Chr8:46376692 6.16E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g289 Blo01g01776 . . . . Bpe02g00168 . Bma01g02556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017226 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 6