Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02558 ATAATGGCTGTCACTTCCTCCAGTAAGGATGCAAATAAGATATCAATGGACAACGGGAAGTATGTAAGGTACACACCTGAACAAGTGGAAGCCCTAGAGAGGGTTTATTATGAATGCCCCAAACCCAGTTCTATTCGTCGCCAACAGCTTATCAGAGAATGCCCCATTCTATGCAACATCGAGCCCAAGCAAATTAAAGTTTGGTTCCAGAACAGAAGATGTAGAGAGAAGCAACGAAAAGAGTCGTCGCGACTGCAAGCAGTGAACAAGAAGCTAACAGCCATGAATAGGCTTTTAATGGAGGAAAACGATCGTTTGCAGAAACAAGTATCACAGCTGGTGTACGTCAACACCTTTTTTCGCCAACAGACTCAAAATTCTACTCTAGCCACCAACGACACAAGCTGTGATTCAGTGGTAACAACTGGTCAACACCATCAAACTTCTCAGCATCCATTAAAGGATGCCAGCCCTGCAGGACTTTTGTCCATTGCGGAGGAGACTTTAACAGAGTTTATTTCAAAGGCTACTGGAACTGCTGTGGAGTGGGTCCAATTGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCCTAGTTCTGCCGGAGTAGCTGCTCGAGCATGCGGCCTTGTTGGCTTAGAACCAACCAAGGTTGTTGAAATCATTAAAGATCGGCCTTTGTGGTTTCGGGATTGCCGAGCAGTAGATGTTCTAAATGTGTTGTCCACAGGAAATGGTGGAACCATTGAACTTCTTTACATGCAGCTCTACTCACCGACGACGCTGGCCCCTGCTCGTGATTTCTGGTTGCTCCGCTACACTTCTGTTTTGGAAGATGGCAGTCTTGTGGTCTGTGAAAGATCACTTAACAATACTCAGAATGGTCCAAGCATGCCACCAGTACAGAATTTTGTGCGAGCCGAAATGCATTGGAGCGTGCCTGAAGTGTTACGCCCTCTATACCAGTCAGCTTTTCGGCTACTGAGACAGATATCTCAAGAGATTTCTCAGCCGAACGTCTCCGGATGGGGAAGAAAGCCTGCTGCTCTGCGTAACCTTAGCCACAAATTAAGTAGGGGATTTAACGATGTGCCTCCAGCAATTCTTCTTAGATTTCTTCGAGAAAACCGATCCGAATGGGCAGATAGTAGCATTGATGCTTATTCAGCTGCATCGATTAAAATGAGTCCATGTGTTGCCTTACCTAGTACTCAGCTCGGAGCATATGGCGGGCAGGTTATTCTTCCACTGGCTAACACCATCGAAAAAGAAGAGGCAAGTAATATTTGTTTTTTAAGATCGAGCATTTCCATCATTGAATCGCTCACAATCTCACGATATTTTTTCGTGCATTGCCAGCTTTGCAGTGGAGTGGATGAGAATTCTATCGGCACTTGTGCTGAACTCATCTTTTCTCCCATTGATGCCTCCTTTCCCGACGATGCCCCTATTTTATCTTCTGGGTTTCGCATAATTTCTCTTGATTCTATGACGGATGCCTCGAGTCCAAACCGAACGCTTGATCTTACGTCAGCTCTTGATGTTGGAAAGGAAGGAAACAAAGGGCTGGGAAATTGTGGTGGACGATACGGAAAATCAAAATCGGTGATGACAATTGCCTTCCAATTTGCATTTGACGTTCAACTTCAAGACAATGTATCAGCCATGGCTAGGCAGTATGTGAGGAGCATTATAGCTTCTGTCCAGCGTGTGGCTTTCGCTCTTTCACCTGCTCGTTTTAGCTCTTTCTCGCCTCTTCATTCCCCACCTCACACTCCCCAAGCTTTCACACTTGCCCGATGGATCTGCCATAGCTACAGGTGTTTTCTAGGGGTAGAACTCCTGAAGAATGAAGAAAGAGATTCTCTTCTGAGAACCCTTTGGCATCACTCTGACGCAGTTATATGCTGCTCCTTGAAGGCACTTCCAGTTTTTACATTTGCAAATCAGGCAGGACTAGACATGCTAGAGACAACCTCGATAGCGCTGAATGGCATAACTCTGGAAATGATCTTTGATGACAGTGGAAAAAAGACATTTTTCTCTGAGTTCCCCCACATACTGCAGCAGGCGGTTTCTGCTTGTCCTAGCATGGGCCGGCCGGTTTCCTACGACCGAGCCGTGGCTTGGAAGGTGCTGAATGAAGAAGAAAATGTTCAGTGCATCTGCTTCATGTTTATCAACTGGTCTTTTGCTGAAAATTAG 2220 45.86 IMAVTSSSKDANKISMDNGKYVRYTPEQVEALERVYYECPKPSSIRRQQLIRECPILCNIEPKQIKVWFQNRRCREKQRKESSRLQAVNKKLTAMNRLLMEENDRLQKQVSQLVYVNTFFRQQTQNSTLATNDTSCDSVVTTGQHHQTSQHPLKDASPAGLLSIAEETLTEFISKATGTAVEWVQLPGMKPGPDSIGIVAISPSSAGVAARACGLVGLEPTKVVEIIKDRPLWFRDCRAVDVLNVLSTGNGGTIELLYMQLYSPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPPVQNFVRAEMHWSVPEVLRPLYQSAFRLLRQISQEISQPNVSGWGRKPAALRNLSHKLSRGFNDVPPAILLRFLRENRSEWADSSIDAYSAASIKMSPCVALPSTQLGAYGGQVILPLANTIEKEEASNICFLRSSISIIESLTISRYFFVHCQLCSGVDENSIGTCAELIFSPIDASFPDDAPILSSGFRIISLDSMTDASSPNRTLDLTSALDVGKEGNKGLGNCGGRYGKSKSVMTIAFQFAFDVQLQDNVSAMARQYVRSIIASVQRVAFALSPARFSSFSPLHSPPHTPQAFTLARWICHSYRCFLGVELLKNEERDSLLRTLWHHSDAVICCSLKALPVFTFANQAGLDMLETTSIALNGITLEMIFDDSGKKTFFSEFPHILQQAVSACPSMGRPVSYDRAVAWKVLNEEENVQCICFMFINWSFAEN 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83240242 83245039 + Bma003440.1 Bma01g02558 77075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02558 739 SMART HOX_1 17 83 IPR001356 GO:0003677
Bma01g02558 739 Gene3D - 12 86 - -
Bma01g02558 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 316 368 IPR044830 GO:0003700
Bma01g02558 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 7 314 IPR044830 GO:0003700
Bma01g02558 739 PANTHER CLASS III HD-ZIP PROTEIN CNA1 368 736 - -
Bma01g02558 739 PANTHER CLASS III HD-ZIP PROTEIN CNA1 7 314 - -
Bma01g02558 739 Pfam START domain 164 317 IPR002913 GO:0008289
Bma01g02558 739 SMART START_1 163 384 IPR002913 GO:0008289
Bma01g02558 739 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Bma01g02558 739 PANTHER CLASS III HD-ZIP PROTEIN CNA1 316 368 - -
Bma01g02558 739 SUPERFAMILY Bet v1-like 163 317 - -
Bma01g02558 739 CDD homeodomain 20 80 IPR001356 GO:0003677
Bma01g02558 739 ProSiteProfiles START domain profile. 154 358 IPR002913 GO:0008289
Bma01g02558 739 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Bma01g02558 739 Coils Coil 85 109 - -
Bma01g02558 739 Pfam MEKHLA domain 602 736 IPR013978 -
Bma01g02558 739 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 368 736 IPR044830 GO:0003700
Bma01g02558 739 Gene3D - 198 330 IPR023393 -
Bma01g02558 739 CDD bZIP 72 111 - -
Bma01g02558 739 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02558 Bma04g00411 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02558 Bma-Chr1:83240242 Bma07g01495 Bma-Chr7:50585249 0 dispersed
Bma01g02558 Bma-Chr1:83240242 Bma04g00411 Bma-Chr4:3332220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56819 PF01852 START 2.40E-31 CL0209 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02558 K09338 - rcu:8275667 994.956