Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02561 CAGGTCCATGTTGGTGGTTCTCCGTTATACAGAGTAGAACGAAAGCTGGGTAAAGGTGGTTTTGGACAAGTTTATGTAGGTCGGCGAATTGGTCCTGGAAGCTCAAATGAAAGAAGTGGGCCTGGAGCGCTGGAGGTAGCCTTAAAATTTGAGCATAGAAGCAGTAAAGGATGTAATTACGGCCCGCCCTACGAGTGGCAAGTTTACAATGCACTTGGTGGTAGTCATGGTGTGCCTCAAGTTCACTACAAAGGCAGGCAAGGTGACTATTATGTCATGGTTATGGATATGCTTGGATCTAGTCTATGGGATGTTTGGAATAATAATTCGCACACGATATCCATTGAAATGGTTGCATGTATCGCAATTGAGGCAATCTCCATTTTAGAGAAGATGCACTCTAAAGGGTATGTGCACGGGGACGTGAAACCTGAGAACTTTTTGCTTGGGCCAACGGGTACCCCAGAAGAGAAAAAGTTATTTCTTGTTGATCTTGGCTTAGCTACCAAGTGGCTAGATAGTTCAACAGGTCAACACGTCGAGTATGATCAGAGGCCAGATGTTTTTAGGGGAACAGTGCGATATGCTAGTGTGCATGCTCATCTTGGTAGAACTGCCAGCCGGAGAGATGACTTGGAATCTCTTGCTTATACGCTTATTTTTCTGCTCCGTGGCAGGTTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAAAGGAAAATGGCCACTTCCCCAGAATCTCTTTGTTGTTTTTGCCCTCAGCCCTTTAAACAATTTGTGGAGTTCGTAGTCAATTTGAAATTCGATGAAGAGCCCAACTATGCAAAGTATATCTCCCTCTTTGATGGGATTGTCGGTCCAAATCCTGATATTAGGCCAATCAACACAGATGGTGCTCAAAAGGTATCTAGTTCTTCTAACAATATCAGTTTTATTCTGAAGCTTATTTGTCAGGTTGGACATAAAAGAGGAAGATTGAGCATGGAGGAGGAAGATGATGAACAACCCAAGAAGAAGGTTCGAATGGGGATGCCTGCCACTCAATGGATTAGCGTCTATAGTGCTCGCCGGCCTATGAAGCAGAGATATCACTACAATGTTGCGGATGTGAGGCTATCTCAGCACATTGAGAAAGGAAATGAAGATGGATTGTTTATCAGCTGCGTGGCTTCTAATTCAAATCTTTGGGCTTTAATCATGGATGCTGGCACAGGCTTCTCTGTTCAAGTTTATGAAATCTCCCCTTTATTTCTTCACAAGGAATGGATTATGGAACAGTGGGACAAAAACTTCTACATCAGTGCAATAGCTGGAGCTAATAATGGAAGCTCCTTAGTTGTAATGTCTAAGGGGACCCAGTACCTGCAGCAGTCTTATAAAGTTAGTGACTCATTCCCATTTAAGTGGATAAATAAAAAGTGGAAAGAAGGGTTTTATGTCACTTCTATGGCCACTGCTGGAAGTAGATGGGCCATTGTCATGTCTCGTGGGGCTGGATTTTCAGACCAGGTTGTTGAACTTGATTTCTTGTATCCAAGCGATGGTATTCATAGAAGGTGGGATGGTGGTTATCGGATCACATCAACTGCTGCAACAGGGGACCAGGCTGCTTTTGTTCTCAGTGTTCCGAGAAGAAAACCATCCGATGAAACACAAGAAACACTCCGTACTTCTGCTTTTCCGAGTACCCATGTTAAGGAGAAATGGGCAAAAAATCTTTACATTTCATCTATTTGTTATGGCCGAACTGTTTCATGA 1773 43.26 QVHVGGSPLYRVERKLGKGGFGQVYVGRRIGPGSSNERSGPGALEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPQVHYKGRQGDYYVMVMDMLGSSLWDVWNNNSHTISIEMVACIAIEAISILEKMHSKGYVHGDVKPENFLLGPTGTPEEKKLFLVDLGLATKWLDSSTGQHVEYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKRKMATSPESLCCFCPQPFKQFVEFVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKVSSSSNNISFILKLICQVGHKRGRLSMEEEDDEQPKKKVRMGMPATQWISVYSARRPMKQRYHYNVADVRLSQHIEKGNEDGLFISCVASNSNLWALIMDAGTGFSVQVYEISPLFLHKEWIMEQWDKNFYISAIAGANNGSSLVVMSKGTQYLQQSYKVSDSFPFKWINKKWKEGFYVTSMATAGSRWAIVMSRGAGFSDQVVELDFLYPSDGIHRRWDGGYRITSTAATGDQAAFVLSVPRRKPSDETQETLRTSAFPSTHVKEKWAKNLYISSICYGRTVS 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83267949 83271228 + Bma003443.1 Bma01g02561 77078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02561 590 CDD STKc_CK1 10 286 - -
Bma01g02561 590 ProSitePatterns Protein kinases ATP-binding region signature. 16 49 IPR017441 GO:0005524
Bma01g02561 590 SUPERFAMILY Protein kinase-like (PK-like) 10 292 IPR011009 -
Bma01g02561 590 PANTHER - 2 563 - -
Bma01g02561 590 ProSiteProfiles Protein kinase domain profile. 10 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02561 590 PANTHER CASEIN KINASE-RELATED 2 563 - -
Bma01g02561 590 Gene3D Transferase(Phosphotransferase) domain 1 6 314 - -
Bma01g02561 590 Pfam Protein kinase domain 10 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02561 590 SMART serkin_6 10 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02561 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02561 - - - zju:107420390 1116.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02561 Bma-Chr1:83267949 Bma15g00352 Bma-Chr15:3761917 0 dispersed
Bma01g02561 Bma-Chr1:83267949 Bma04g00413 Bma-Chr4:3341805 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g228 Blo01g01781 . . . . Bpe02g00296 . Bma01g02561 . . Cma01g01441 . . . . . . Bhi04g01133 . . . . . Lcy13g1381 . . . . . . . . . . . . . Chy04g00161 Cme03g01720 . . . . . . . . . Cmo01g01495 . . . . . . . . . . . . . . Cla08g01243 . . . . . . Lsi08g01105 Csa02g02295 . Cme04g00185
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000235 6 9 5 7 6 4 9 4 4 5 4 4 8 4 4 7 4 6 8 4 4 4 4 4 4 4 4 11 5 5 161
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66311 PF00069 Pkinase 1.40E-16 CL0016 Bma PK