Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02568 ATGGCTGCTTCAATTACTCCATCTAAGAGGCAGCCTGATCGTAACTTTATGGTTTCCCAAGGAAAAAGAAAGTGGCAAAAGTCATCAGGCGCTTTTTCACAAAATCAAATGAAGTTTGCATCCGGGAGCATTGTTTTACGATTCCTATGTCCTGTTTCTAAATCAGGAAGCATTATTGGAAAAGGAGGCGTCAGCGGCGGAGTTGATGCAGTTAGGAGAGCTGTTAAATCTATTTCTCAGCAGCTCTTGGAGAACCATCGTGATAATGATTCTTCGGCAAGCAATATGCCAGAAAAATTACCCCACTCTAAGGCTGAAGCTTATGCCCTAGTCAATCATCCTCAAGGAGCATCTCATATTGGGCCTAATGATGATGCAGACAGTCAGTCTGCTGATGCCCACATTGCTTCTAAATTTCATGAAAGCAGTTTTTCTGACAGAATGAATACTTCGCCGGACACGCTTAGCTTTCGATTGTGGTGCCCAGCTGAGAGAGTGGGGGGTTTAATTGGAAAAGGAGGAACAATAATTAAAACCATACAGCAAGAGACCCACTGTGAGATTAGAGTTTTGGAAGGTGTTCCTGACTCCGACAATCGGATTATCCTTGTGTCTGGAATTGCGCGTCCAGAAGAAAGAATATCTGCTGTGCAAGATGCCGTTCTTCGTGTACAAAGTAGGATTGTCAAGGCTGTCCCAGATAGCAAGGAGCATAATGTGATGGCAAAGATTCTGGTTCCTTCCAATCAAATTGGTTGCCTGCTTGGAAAGGGTGGATCCGTCATAGCAGAAATGAGGAAGTCATCTACAGCACATATCCGCATAATGGTAAAAGATCAGATTCCGAAGTGTGCTGCTGAAGATGAAGTAGTTCAGATAAATGGAGACTTTGATTCAGTTCAAGAGGCTCTTTTGCAAATAACTACACGGTTGCAACAAAATTTTTTCCGTAATGCATTTCCTTCTATGAAATATTCTTCAAATCCAGCGTCGCTTGATCAAGGGCCTCCATTTCCTTCATTTATGGGAGGAAGACAATTGTCACCTCCTGGAGTATTTTCCAACTTTGGCCCTACATTTGCCAAGTTTAATTCTGTTAGTGGCCTGGCCCCATATGGGAGTTTGCGTTCCCACGATGATCGACAATCTTTTATGCACAATATTCATAGACCAGGAATTCCTCCTTTCTTGTCTGACAGAAAGCCATGGGGGCTCCCGGATGGTGGGCCATTAGGACTGCCTGATTTTGTGGGTGCTCCTCATAGAAGAATTGGTGGACTTGGAGGAGGTAGCCAATCAGCTATTATCACAAACACCACTGTTGAAGTTGTTGTACCTCACAGTCTTGTTCCTGAAATATATGGAGAAGATGGTGAATGCTTAAGGCAAATTCGTCAGATTTCTGATGCAAAAATTACAATTACTGAAGCAAAGCCTGGAGCGGTTGAGACTGTCATTATAATTTCTGGAACACCAGAACAAACCCACGCCGCCCAGAGCTTAATTCAAGCATTTGTCATGTGTGGATCTGAGTCAAGTTGA 1542 43.39 MAASITPSKRQPDRNFMVSQGKRKWQKSSGAFSQNQMKFASGSIVLRFLCPVSKSGSIIGKGGVSGGVDAVRRAVKSISQQLLENHRDNDSSASNMPEKLPHSKAEAYALVNHPQGASHIGPNDDADSQSADAHIASKFHESSFSDRMNTSPDTLSFRLWCPAERVGGLIGKGGTIIKTIQQETHCEIRVLEGVPDSDNRIILVSGIARPEERISAVQDAVLRVQSRIVKAVPDSKEHNVMAKILVPSNQIGCLLGKGGSVIAEMRKSSTAHIRIMVKDQIPKCAAEDEVVQINGDFDSVQEALLQITTRLQQNFFRNAFPSMKYSSNPASLDQGPPFPSFMGGRQLSPPGVFSNFGPTFAKFNSVSGLAPYGSLRSHDDRQSFMHNIHRPGIPPFLSDRKPWGLPDGGPLGLPDFVGAPHRRIGGLGGGSQSAIITNTTVEVVVPHSLVPEIYGEDGECLRQIRQISDAKITITEAKPGAVETVIIISGTPEQTHAAQSLIQAFVMCGSESS 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83296114 83300195 + Bma003450.1 Bma01g02568 77085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02568 513 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 442 498 - -
Bma01g02568 513 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 1 63 - -
Bma01g02568 513 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 64 375 - -
Bma01g02568 513 SMART kh_6 238 312 IPR004087 GO:0003676
Bma01g02568 513 SMART kh_6 153 226 IPR004087 GO:0003676
Bma01g02568 513 SMART kh_6 42 112 IPR004087 GO:0003676
Bma01g02568 513 SMART kh_6 437 507 IPR004087 GO:0003676
Bma01g02568 513 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 63 - -
Bma01g02568 513 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 64 375 - -
Bma01g02568 513 ProSiteProfiles Type-1 KH domain profile. 239 307 - -
Bma01g02568 513 ProSiteProfiles Type-1 KH domain profile. 154 221 - -
Bma01g02568 513 Gene3D K Homology domain, type 1 236 314 IPR036612 GO:0003723
Bma01g02568 513 CDD PCBP_like_KH 156 225 - -
Bma01g02568 513 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 234 317 IPR036612 GO:0003723
Bma01g02568 513 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 442 498 - -
Bma01g02568 513 Pfam KH domain 440 503 IPR004088 GO:0003723
Bma01g02568 513 Pfam KH domain 243 307 IPR004088 GO:0003723
Bma01g02568 513 Pfam KH domain 157 206 IPR004088 GO:0003723
Bma01g02568 513 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 147 217 IPR036612 GO:0003723
Bma01g02568 513 CDD PCBP_like_KH 243 308 - -
Bma01g02568 513 ProSiteProfiles Type-1 KH domain profile. 438 502 - -
Bma01g02568 513 Gene3D K Homology domain, type 1 436 508 IPR036612 GO:0003723
Bma01g02568 513 CDD KH-I 440 503 - -
Bma01g02568 513 Gene3D K Homology domain, type 1 153 231 IPR036612 GO:0003723
Bma01g02568 513 MobiDBLite consensus disorder prediction 1 29 - -
Bma01g02568 513 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 438 506 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02568 K21444 PCBP3_4; poly(rC)-binding protein 3/4 - qsu:112004419 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02568 Bma-Chr1:83296114 Bma15g00293 Bma-Chr15:2865369 5.17E-59 dispersed
Bma01g02568 Bma-Chr1:83296114 Bma01g01048 Bma-Chr1:11032732 1.05E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g580 Blo01g01784 . . . Bpe02g00157 . . Bma01g02568 . . . Cma09g00613 . . . Cpe06g00474 . . . . . . . . . . . . . . . Cone4ag1264 Cone7ag0879 . . Lsi04g02311 Csa03g04530 Chy04g00173 . . . Bda11g00816 . . . . . Sed05g1523 Cmo01g01505 Cmo09g00601 . . . Car09g00545 . Cpe02g00498 Bhi09g02548 Tan01g3895 Cmetu04g0312 . Hepe01g2200 . . Cla11g01461 Cam11g1513 Cec11g1551 Cco11g1546 . Cmu11g1494 Cre11g1915 . . . Cme04g00201
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007521 1 1 1 1 1 0 3 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35