Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02574 ATGGAATCTAAAAAAGCTACAGAATCATCTACCAGATCATTCATAACCTCGAAGGAGCACGGAAATTTGCTGCAACTGCCTAAGAAACCATTGAATTCCTTGTCTTATGATGAAGATGAGCCAGTTGTATCACCGTTTGGTCGGATTATTCCCATTTCCGACCAGGTGGATGAGCCGGGAGACTTCCCGGGATTCTTTGCCAATCCAAATCCTTCGCCTGACTTAAAGTCCGGCGGTGGACAACAGGCGAAAAGAAGAAATTTGAGAAGCAATGTTCAAGTTAAGATATTACCTGAATCGGCCCTCATATACGCAGGAGATAGCCACGAAACGTACGCTGTGGCGCTTAGCGTGAAGGCTGCCCCGCCACCGTCTTCTCCCACGTACCGCGCTCCGATTGACTTAGTGACAGTACTCGACGTAAGTGACAGAATGACTGGCGCTAAGCTGGAGATGCTAAAGCGCGCTATGCGCCTGGTCATCTCCTCTCTCGTCTCGTCCGACCGCCTTTCTATCGTTGCTTTCTCTGGCAACCCCAAGCGGCTGCTACCTCTGAAGAGAATGACAGTTCAAGGACAGCGTACAGCGTGTCAAGTGATCGACCAACTCGTGTGCAGCGACGGCAACTGCGTTGCAGAAGCCACTAGAAAGGCGGCCCTGGTGCTTGAAAATCGACGGGAGAAAAACCCAGTAGCGAGCATCATGCTTTTGCTGGATGGCCAGGATGAGCGGTTTCAGAACCGCAATGATTGTATCGATCAACTTCATTGGAGGAGCCAAGAGAGGTCTATCGGTTTCTCTCCTATTGAGATTCCCGTTAATGAATTTGGGTTTGGAGAAGATGGTAGCTTCAATCACGAACTTGCTGAAGTATCTTTTGCTAATTGCATTGGTAGTTTACAAAGTCCGGTTGTGCAAGACCTCAGGATTCAGCTCAATTTCTCCGATTCTTCGTCTGTTGAGATATTGGCTATCTACATGACAATTGGGTCATCGCCGATTGTCTGCAATTCAGGTTGCCTGCGGCTCGGCGATTTATACGCTGACGAGGAGAGAGAATTACTCGTCGAATTAAGGATCCCTACGTCGGCAGCTGGAAACCACCATCCGATGTCCGTACGATGTCTTTACAAAGACGCCGCAACCCAAGATGTTGTCTTTGACAGAGAAGAAGCTCTTCTCGTACCACATCCCCACGTCGTTCGAACATCACCTTCTAAAACTGATAAGTTGAAGAATATGTTTATATCTACTCGTGCGGTGGCTGAATCTAGGAGCCTAATCGACGCCGGCAATTTTTTGAGCGCTTATAATTTGCTCGCGTCAGCTCAAGCTTTGCTCACGCAGTCTAACTCCACTCCCGGCGGCGACGAATACGTTCGAACGTTGGAGGTTGAGATGGCAGAGTTGCATTGGCAGAGGCAGAAGGAGCTGGAGGAGCAGCATCAGATGACGACGACGACGACGACGACGACGACGATGGAACAGAGTCAGAGCAGATGCAGCGAGAGAGAAACGACGACAGTTGTTGACGAGACCAAGGACCCTTCCACGCCCAAATCAGCCTGGAAAGCGGTTGATAAGCTGAATAATACGGCCATCGCAAAGTTGTTGAGAATTAGATCGGCAGGAGACTTGCATGGCTTCGAAAATGCAAGGTTTTAG 1665 49.31 MESKKATESSTRSFITSKEHGNLLQLPKKPLNSLSYDEDEPVVSPFGRIIPISDQVDEPGDFPGFFANPNPSPDLKSGGGQQAKRRNLRSNVQVKILPESALIYAGDSHETYAVALSVKAAPPPSSPTYRAPIDLVTVLDVSDRMTGAKLEMLKRAMRLVISSLVSSDRLSIVAFSGNPKRLLPLKRMTVQGQRTACQVIDQLVCSDGNCVAEATRKAALVLENRREKNPVASIMLLLDGQDERFQNRNDCIDQLHWRSQERSIGFSPIEIPVNEFGFGEDGSFNHELAEVSFANCIGSLQSPVVQDLRIQLNFSDSSSVEILAIYMTIGSSPIVCNSGCLRLGDLYADEERELLVELRIPTSAAGNHHPMSVRCLYKDAATQDVVFDREEALLVPHPHVVRTSPSKTDKLKNMFISTRAVAESRSLIDAGNFLSAYNLLASAQALLTQSNSTPGGDEYVRTLEVEMAELHWQRQKELEEQHQMTTTTTTTTTMEQSQSRCSERETTTVVDETKDPSTPKSAWKAVDKLNNTAIAKLLRIRSAGDLHGFENARF 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83348535 83350199 - Bma003456.1 Bma01g02574 77091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02574 554 MobiDBLite consensus disorder prediction 482 504 - -
Bma01g02574 554 ProSiteProfiles VWFA domain profile. 134 292 IPR002035 -
Bma01g02574 554 MobiDBLite consensus disorder prediction 60 86 - -
Bma01g02574 554 MobiDBLite consensus disorder prediction 1 36 - -
Bma01g02574 554 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 28 554 - -
Bma01g02574 554 PANTHER E3 UBIQUITIN-PROTEIN LIGASE WAV3 28 554 - -
Bma01g02574 554 SUPERFAMILY vWA-like 132 283 IPR036465 -
Bma01g02574 554 MobiDBLite consensus disorder prediction 479 521 - -
Bma01g02574 554 SMART VWA_4 132 309 IPR002035 -
Bma01g02574 554 Pfam von Willebrand factor type A domain 135 241 IPR002035 -
Bma01g02574 554 Gene3D von Willebrand factor, type A domain 134 298 IPR036465 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02574 - - - rcu:8288063 540.806
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02574 Bma01g01363 CCT
Bma01g02574 Bma02g00100 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02574 Bma-Chr1:83348535 Bma15g01086 Bma-Chr15:43254845 7.17E-101 dispersed
Bma01g01363 Bma-Chr1:20563237 Bma01g02574 Bma-Chr1:83348535 7.12E-174 wgd
Bma01g02574 Bma-Chr1:83348535 Bma02g00100 Bma-Chr2:886548 3.18E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g562 Blo01g01789 . Bda01g00923 . Bpe02g00152 . . Bma01g02574 Cmo05g00592 . . . . . Sed04g0234 . . Bhi04g00900 Tan02g2512 Cmetu03g0168 . Hepe10g0402 . . Cla08g01186 Cam08g1651 Cec08g1227 Cco08g1346 Clacu08g1347 . Cre08g1133 . . Cone17ag1157 Cone20ag0572 . . . . Blo17g00085 Blo18g00728 . Bda13g01346 Bpe02g01168 Bpe14g00499 Bma01g01363 Bma02g00100 . . . . Cma05g00566 . . . . . . . . . . . . . . . . . . Lsi08g01049 Csa02g02233 Chy03g01284 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001939 4 2 3 5 5 2 0 2 2 2 2 2 4 0 2 3 2 2 0 2 2 2 2 2 1 1 2 3 2 3 66