Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g02579 | ATGACAGCTGCAAATCCTCAGCCTCTGCGTGCACGTCCTTTCGGGGATCGCATCCAAAAGTCTTTCCCGATTGAGGACGACGGTGAATGTGAAGATTCCGGTGGTGATGGTGACGATACGATGGACGACGTTGAGGAGATTGGTGTGAATTCCGTGAGCGTTGCGAATCATAGTGGTATTGTAATGGCGTCCAGGACTGGTGAACTAACACTCTCCTTCGAAGGCGAGGTTTATGTGTTTCCGGCTGTAACCACTGAAAAGGTGCAAGCTGTACTTCTGCTTCTCGGAGGACGTGAGGATGTCCCAACTGTTGTACCAACAACTGAAGTATCTGATGCTCAAAATTATAGGGTTTTAGGTGACAGCCCCCAAAAGCGCTCAAACCTGTCAAGAAGAATTGCCTCTTTGGTTAGATTCCGTGAAAAAAGGAAAGAGAGATGTTTTGAGAAGAAAATTAGATACACCGTACGAAAGGAGGTTGCACAAAGGATGCATCGTAAGAATGGGCAGTTTGCATCCATGAAAGAAACCTCAAATGGTTCAAGTTTGGAGTCCATACAAGGCAACCTTCAAGATAGCACTCCTCCTTCTGAAACTGTCTTGCGAAGTTGTCAGCACTGTGGTGTCTCTGAAAGTAATACTCCTGCAATGCGACGTGGACCTGCTGGACCGAGGACTCTATGTAATGCTTGTGGTTTGATGTGGGCAAATAAGGGAACATTGAGAGATCTAAGCAAGGGAGGAAGGAGTCTTTTCCTGGATAATATTGAACCTGAAACAACAATGGACGTCAAGCCTGCAGTTGTAGATGGAGACCTTTCTGGCTATGGAGATAATCAGAAATCTCCAGAAGAATCTGGTAATCTAGTTGACAAAAGTTCCAGTGATCCTTCTCTCAATCAATACAATGAAGATCTGCGTGACTGCACCGACGAGTTTATTGATTCTTTTCCCGTGCAAATTGTGCATTCTTCGCTCAATGAAGACGAGCAGGACCCTCTGATTGGAATTCCTAGTGTTTCAGATACAGAGATAGTCGTCCCTCCCTGCAAGTTTTAA | 1059 | 45.42 | MTAANPQPLRARPFGDRIQKSFPIEDDGECEDSGGDGDDTMDDVEEIGVNSVSVANHSGIVMASRTGELTLSFEGEVYVFPAVTTEKVQAVLLLLGGREDVPTVVPTTEVSDAQNYRVLGDSPQKRSNLSRRIASLVRFREKRKERCFEKKIRYTVRKEVAQRMHRKNGQFASMKETSNGSSLESIQGNLQDSTPPSETVLRSCQHCGVSESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLFLDNIEPETTMDVKPAVVDGDLSGYGDNQKSPEESGNLVDKSSSDPSLNQYNEDLRDCTDEFIDSFPVQIVHSSLNEDEQDPLIGIPSVSDTEIVVPPCKF | 352 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 83419158 | 83423341 | - | Bma003463.1 | Bma01g02579 | 77096 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g02579 | 352 | Gene3D | - | 200 | 250 | IPR013088 | GO:0006355|GO:0008270 | |
Bma01g02579 | 352 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Bma01g02579 | 352 | Pfam | GATA zinc finger | 204 | 240 | IPR000679 | GO:0006355|GO:0043565 | |
Bma01g02579 | 352 | Pfam | CCT motif | 132 | 173 | IPR010402 | GO:0005515 | |
Bma01g02579 | 352 | ProSiteProfiles | CCT domain profile. | 132 | 174 | IPR010402 | GO:0005515 | |
Bma01g02579 | 352 | SMART | tify_2 | 62 | 97 | IPR010399 | - | |
Bma01g02579 | 352 | SMART | GATA_3 | 198 | 251 | IPR000679 | GO:0006355|GO:0043565 | |
Bma01g02579 | 352 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 199 | 248 | - | - | |
Bma01g02579 | 352 | MobiDBLite | consensus disorder prediction | 28 | 42 | - | - | |
Bma01g02579 | 352 | MobiDBLite | consensus disorder prediction | 279 | 303 | - | - | |
Bma01g02579 | 352 | ProSiteProfiles | Tify domain profile. | 62 | 97 | IPR010399 | - | |
Bma01g02579 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 | 1 | 348 | - | - | |
Bma01g02579 | 352 | Pfam | tify domain | 66 | 96 | IPR010399 | - | |
Bma01g02579 | 352 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 1 | 348 | IPR045280 | GO:0006355 | |
Bma01g02579 | 352 | MobiDBLite | consensus disorder prediction | 263 | 303 | - | - | |
Bma01g02579 | 352 | ProSiteProfiles | GATA-type zinc finger domain profile. | 198 | 246 | IPR000679 | GO:0006355|GO:0043565 | |
Bma01g02579 | 352 | MobiDBLite | consensus disorder prediction | 172 | 197 | - | - | |
Bma01g02579 | 352 | CDD | ZnF_GATA | 203 | 250 | IPR000679 | GO:0006355|GO:0043565 | |
Bma01g02579 | 352 | ProSitePatterns | GATA-type zinc finger domain. | 204 | 231 | IPR000679 | GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02579 | Bma04g00427 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02579 | Bma-Chr1:83419158 | Bma12g00332 | Bma-Chr12:5430937 | 4.18E-60 | dispersed | |
Bma02g00116 | Bma-Chr2:1077281 | Bma01g02579 | Bma-Chr1:83419158 | 1.52E-139 | transposed | |
Bma01g02579 | Bma-Chr1:83419158 | Bma04g00427 | Bma-Chr4:3442149 | 2.04E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56820 | PF06203 | CCT | 2.10E-13 | CL0281 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g02579 | - | - | twl:120008497 | 421.779 |