Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02579 ATGACAGCTGCAAATCCTCAGCCTCTGCGTGCACGTCCTTTCGGGGATCGCATCCAAAAGTCTTTCCCGATTGAGGACGACGGTGAATGTGAAGATTCCGGTGGTGATGGTGACGATACGATGGACGACGTTGAGGAGATTGGTGTGAATTCCGTGAGCGTTGCGAATCATAGTGGTATTGTAATGGCGTCCAGGACTGGTGAACTAACACTCTCCTTCGAAGGCGAGGTTTATGTGTTTCCGGCTGTAACCACTGAAAAGGTGCAAGCTGTACTTCTGCTTCTCGGAGGACGTGAGGATGTCCCAACTGTTGTACCAACAACTGAAGTATCTGATGCTCAAAATTATAGGGTTTTAGGTGACAGCCCCCAAAAGCGCTCAAACCTGTCAAGAAGAATTGCCTCTTTGGTTAGATTCCGTGAAAAAAGGAAAGAGAGATGTTTTGAGAAGAAAATTAGATACACCGTACGAAAGGAGGTTGCACAAAGGATGCATCGTAAGAATGGGCAGTTTGCATCCATGAAAGAAACCTCAAATGGTTCAAGTTTGGAGTCCATACAAGGCAACCTTCAAGATAGCACTCCTCCTTCTGAAACTGTCTTGCGAAGTTGTCAGCACTGTGGTGTCTCTGAAAGTAATACTCCTGCAATGCGACGTGGACCTGCTGGACCGAGGACTCTATGTAATGCTTGTGGTTTGATGTGGGCAAATAAGGGAACATTGAGAGATCTAAGCAAGGGAGGAAGGAGTCTTTTCCTGGATAATATTGAACCTGAAACAACAATGGACGTCAAGCCTGCAGTTGTAGATGGAGACCTTTCTGGCTATGGAGATAATCAGAAATCTCCAGAAGAATCTGGTAATCTAGTTGACAAAAGTTCCAGTGATCCTTCTCTCAATCAATACAATGAAGATCTGCGTGACTGCACCGACGAGTTTATTGATTCTTTTCCCGTGCAAATTGTGCATTCTTCGCTCAATGAAGACGAGCAGGACCCTCTGATTGGAATTCCTAGTGTTTCAGATACAGAGATAGTCGTCCCTCCCTGCAAGTTTTAA 1059 45.42 MTAANPQPLRARPFGDRIQKSFPIEDDGECEDSGGDGDDTMDDVEEIGVNSVSVANHSGIVMASRTGELTLSFEGEVYVFPAVTTEKVQAVLLLLGGREDVPTVVPTTEVSDAQNYRVLGDSPQKRSNLSRRIASLVRFREKRKERCFEKKIRYTVRKEVAQRMHRKNGQFASMKETSNGSSLESIQGNLQDSTPPSETVLRSCQHCGVSESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLFLDNIEPETTMDVKPAVVDGDLSGYGDNQKSPEESGNLVDKSSSDPSLNQYNEDLRDCTDEFIDSFPVQIVHSSLNEDEQDPLIGIPSVSDTEIVVPPCKF 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83419158 83423341 - Bma003463.1 Bma01g02579 77096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02579 352 Gene3D - 200 250 IPR013088 GO:0006355|GO:0008270
Bma01g02579 352 MobiDBLite consensus disorder prediction 1 42 - -
Bma01g02579 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355|GO:0043565
Bma01g02579 352 Pfam CCT motif 132 173 IPR010402 GO:0005515
Bma01g02579 352 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Bma01g02579 352 SMART tify_2 62 97 IPR010399 -
Bma01g02579 352 SMART GATA_3 198 251 IPR000679 GO:0006355|GO:0043565
Bma01g02579 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Bma01g02579 352 MobiDBLite consensus disorder prediction 28 42 - -
Bma01g02579 352 MobiDBLite consensus disorder prediction 279 303 - -
Bma01g02579 352 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Bma01g02579 352 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 348 - -
Bma01g02579 352 Pfam tify domain 66 96 IPR010399 -
Bma01g02579 352 PANTHER GATA TRANSCRIPTION FACTOR 28 1 348 IPR045280 GO:0006355
Bma01g02579 352 MobiDBLite consensus disorder prediction 263 303 - -
Bma01g02579 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355|GO:0043565
Bma01g02579 352 MobiDBLite consensus disorder prediction 172 197 - -
Bma01g02579 352 CDD ZnF_GATA 203 250 IPR000679 GO:0006355|GO:0043565
Bma01g02579 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02579 - - - twl:120008497 421.779
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02579 Bma04g00427 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02579 Bma-Chr1:83419158 Bma12g00332 Bma-Chr12:5430937 4.18E-60 dispersed
Bma02g00116 Bma-Chr2:1077281 Bma01g02579 Bma-Chr1:83419158 1.52E-139 transposed
Bma01g02579 Bma-Chr1:83419158 Bma04g00427 Bma-Chr4:3442149 2.04E-46 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g532 . Blo12g00738 . . Bpe02g00146 Bpe04g00413 Bma04g00427 Bma01g02579 Cmo05g00563 Cmo12g00161 . . . . Sed03g1396 . Cpe07g00176 Bhi04g01396 Tan02g2466 Cmetu03g0931 . . . . . . . . . . . . . . . . . . . . . Bda11g00807 . . . . . . . . Cma12g00207 . . . . . . . . . . . . . . . . . . . Lsi08g01017 Csa02g02199 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g00427 BCT 3109 3325 Tify Gene Family AT4G24470 54.1 1.5e-50 196.8
Bma12g00332 . 93 300 Tify Gene Family AT1G51600 58.6 2.5e-58 222.6
Bma02g00116 . 25 241 Tify Gene Family AT1G51600 53.5 3.5e-52 202.2
Bma01g02579 BCT 68 246 Tify Gene Family AT1G51600 60.8 4.4e-47 185.3
Bma04g00427 BCT 3136 3310 Tify Gene Family AT1G51600 55.1 1.2e-39 160.6
Bma04g00427 BCT 3109 3325 Tify Gene Family AT4G24470 54.1 1.5e-50 196.8
Bma12g00332 . 93 300 Tify Gene Family AT1G51600 58.6 2.5e-58 222.6
Bma02g00116 . 25 241 Tify Gene Family AT1G51600 53.5 3.5e-52 202.2
Bma01g02579 BCT 68 246 Tify Gene Family AT1G51600 60.8 4.4e-47 185.3
Bma04g00427 BCT 3136 3310 Tify Gene Family AT1G51600 55.1 1.2e-39 160.6
Bma05g01092 CCT 1 184 Tify Gene Family AT4G14720 52.8 7.2e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56820 PF06203 CCT 2.10E-13 CL0281 Bma TF