Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02579 ATGACAGCTGCAAATCCTCAGCCTCTGCGTGCACGTCCTTTCGGGGATCGCATCCAAAAGTCTTTCCCGATTGAGGACGACGGTGAATGTGAAGATTCCGGTGGTGATGGTGACGATACGATGGACGACGTTGAGGAGATTGGTGTGAATTCCGTGAGCGTTGCGAATCATAGTGGTATTGTAATGGCGTCCAGGACTGGTGAACTAACACTCTCCTTCGAAGGCGAGGTTTATGTGTTTCCGGCTGTAACCACTGAAAAGGTGCAAGCTGTACTTCTGCTTCTCGGAGGACGTGAGGATGTCCCAACTGTTGTACCAACAACTGAAGTATCTGATGCTCAAAATTATAGGGTTTTAGGTGACAGCCCCCAAAAGCGCTCAAACCTGTCAAGAAGAATTGCCTCTTTGGTTAGATTCCGTGAAAAAAGGAAAGAGAGATGTTTTGAGAAGAAAATTAGATACACCGTACGAAAGGAGGTTGCACAAAGGATGCATCGTAAGAATGGGCAGTTTGCATCCATGAAAGAAACCTCAAATGGTTCAAGTTTGGAGTCCATACAAGGCAACCTTCAAGATAGCACTCCTCCTTCTGAAACTGTCTTGCGAAGTTGTCAGCACTGTGGTGTCTCTGAAAGTAATACTCCTGCAATGCGACGTGGACCTGCTGGACCGAGGACTCTATGTAATGCTTGTGGTTTGATGTGGGCAAATAAGGGAACATTGAGAGATCTAAGCAAGGGAGGAAGGAGTCTTTTCCTGGATAATATTGAACCTGAAACAACAATGGACGTCAAGCCTGCAGTTGTAGATGGAGACCTTTCTGGCTATGGAGATAATCAGAAATCTCCAGAAGAATCTGGTAATCTAGTTGACAAAAGTTCCAGTGATCCTTCTCTCAATCAATACAATGAAGATCTGCGTGACTGCACCGACGAGTTTATTGATTCTTTTCCCGTGCAAATTGTGCATTCTTCGCTCAATGAAGACGAGCAGGACCCTCTGATTGGAATTCCTAGTGTTTCAGATACAGAGATAGTCGTCCCTCCCTGCAAGTTTTAA 1059 45.42 MTAANPQPLRARPFGDRIQKSFPIEDDGECEDSGGDGDDTMDDVEEIGVNSVSVANHSGIVMASRTGELTLSFEGEVYVFPAVTTEKVQAVLLLLGGREDVPTVVPTTEVSDAQNYRVLGDSPQKRSNLSRRIASLVRFREKRKERCFEKKIRYTVRKEVAQRMHRKNGQFASMKETSNGSSLESIQGNLQDSTPPSETVLRSCQHCGVSESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSLFLDNIEPETTMDVKPAVVDGDLSGYGDNQKSPEESGNLVDKSSSDPSLNQYNEDLRDCTDEFIDSFPVQIVHSSLNEDEQDPLIGIPSVSDTEIVVPPCKF 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83419158 83423341 - Bma003463.1 Bma01g02579 77096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02579 352 Gene3D - 200 250 IPR013088 GO:0006355|GO:0008270
Bma01g02579 352 MobiDBLite consensus disorder prediction 1 42 - -
Bma01g02579 352 Pfam GATA zinc finger 204 240 IPR000679 GO:0006355|GO:0043565
Bma01g02579 352 Pfam CCT motif 132 173 IPR010402 GO:0005515
Bma01g02579 352 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Bma01g02579 352 SMART tify_2 62 97 IPR010399 -
Bma01g02579 352 SMART GATA_3 198 251 IPR000679 GO:0006355|GO:0043565
Bma01g02579 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 199 248 - -
Bma01g02579 352 MobiDBLite consensus disorder prediction 28 42 - -
Bma01g02579 352 MobiDBLite consensus disorder prediction 279 303 - -
Bma01g02579 352 ProSiteProfiles Tify domain profile. 62 97 IPR010399 -
Bma01g02579 352 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 348 - -
Bma01g02579 352 Pfam tify domain 66 96 IPR010399 -
Bma01g02579 352 PANTHER GATA TRANSCRIPTION FACTOR 28 1 348 IPR045280 GO:0006355
Bma01g02579 352 MobiDBLite consensus disorder prediction 263 303 - -
Bma01g02579 352 ProSiteProfiles GATA-type zinc finger domain profile. 198 246 IPR000679 GO:0006355|GO:0043565
Bma01g02579 352 MobiDBLite consensus disorder prediction 172 197 - -
Bma01g02579 352 CDD ZnF_GATA 203 250 IPR000679 GO:0006355|GO:0043565
Bma01g02579 352 ProSitePatterns GATA-type zinc finger domain. 204 231 IPR000679 GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02579 Bma04g00427 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02579 Bma-Chr1:83419158 Bma12g00332 Bma-Chr12:5430937 4.18E-60 dispersed
Bma02g00116 Bma-Chr2:1077281 Bma01g02579 Bma-Chr1:83419158 1.52E-139 transposed
Bma01g02579 Bma-Chr1:83419158 Bma04g00427 Bma-Chr4:3442149 2.04E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56820 PF06203 CCT 2.10E-13 CL0281 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02579 - - twl:120008497 421.779