Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02585 ATGGAAGCTCTGGCCTCCTTTTCTTCGTCGCTCGTCTCTTTCGGAGCATCAGCTTCTATTTTCGAGAGCTCTGATTGTAGTAGACCTTTGCGCTTGTTCTTCCCCTTCGGTCGGAGAGCAATGCGGGGGCTCTTAGTCACTTGCGCCGCCGAGACTGTCAATACGACGCCGTCTCCGTCTCCGTCTCCGTCTCCGTCTCTGTCTCCGTCTGGTTCGTTGGCTCCGGACGAACTAAAAGCCAAGGAGGTGAAGCTCTGGGGTGGTCGATTTGAGGAGAGGGTCACCGATGTTGTTGAGCGCTCCACCGAGGCCATATCATTAGATAAGGAGCTCTATAAGCACGATATAATGGGAAGCAGGGCTCATGCCTCATGCTTCTATACTTCTATGCTGGCGAAGCAGGGGCTTATGACTGTCTCCGAGAGAGACAGTATTCTTGAAGGTCTTGATGAGATTGAGAGGCGAATTACAAGTGGTGAGTTTGTTTGGAGAAGTGATAGAGAAGATGTGCACATGAACATTGAAGCCAAACTTACAGACATGATTGGTGAACCTGCTAAAAAACTGCATACTGCGAGAAGCCGCAATGACCAAGTTACGACTGATTTTCGGTTATGGTGTCGTGATGCAATTGATGCAATATTGCAGCGTATTAAACATCTTCAGGTTGCACTAGTAACCTTGTCATTAAAGAACAATGGTCTCATTGTTCCCGGTTACACACATTTACAAAGGGCACAACCTGTTATACTCAAGCATCTTCTATTAGCATTGTCGAACAGGTTTCTTGAACGAGATGCTGATCGCTTATTGGATTCTAGAGATGGGCTAAATTTTTTCCCATTAAATGCATGTGCTTTGGCTAGCACAGGTCTTCCCATACCTTTTAGGACTTCCCATGATATAGTAGGCAAATGTGTTGCCATTTGCGTTGGAAAACGCCGCAAACTTCAGGATTCAAGTCTTGATGAGCTAAGAAGTATAAACGCTATGTTTGATGAGGATGTGTATAATTTTCTTGGAATCGAGAATGCAATCAAGAATTTTAGCTCCTAG 1056 45.55 MEALASFSSSLVSFGASASIFESSDCSRPLRLFFPFGRRAMRGLLVTCAAETVNTTPSPSPSPSPSLSPSGSLAPDELKAKEVKLWGGRFEERVTDVVERSTEAISLDKELYKHDIMGSRAHASCFYTSMLAKQGLMTVSERDSILEGLDEIERRITSGEFVWRSDREDVHMNIEAKLTDMIGEPAKKLHTARSRNDQVTTDFRLWCRDAIDAILQRIKHLQVALVTLSLKNNGLIVPGYTHLQRAQPVILKHLLLALSNRFLERDADRLLDSRDGLNFFPLNACALASTGLPIPFRTSHDIVGKCVAICVGKRRKLQDSSLDELRSINAMFDEDVYNFLGIENAIKNFSS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83471085 83482995 + Bma003471.1 Bma01g02585 77102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02585 351 PRINTS Fumarate lyase superfamily signature 234 252 IPR000362 -
Bma01g02585 351 PRINTS Fumarate lyase superfamily signature 189 207 IPR000362 -
Bma01g02585 351 SUPERFAMILY L-aspartase-like 88 295 IPR008948 GO:0003824
Bma01g02585 351 Gene3D - 82 193 IPR024083 -
Bma01g02585 351 Gene3D Fumarase/aspartase (Central domain) 206 288 - -
Bma01g02585 351 PRINTS Argininosuccinate lyase family signature 229 249 - -
Bma01g02585 351 PRINTS Argininosuccinate lyase family signature 188 210 - -
Bma01g02585 351 PRINTS Argininosuccinate lyase family signature 281 297 - -
Bma01g02585 351 PANTHER ARGININOSUCCINATE LYASE 294 351 IPR009049 GO:0004056|GO:0042450
Bma01g02585 351 PANTHER ARGININOSUCCINATE LYASE 81 294 IPR009049 GO:0004056|GO:0042450
Bma01g02585 351 MobiDBLite consensus disorder prediction 53 74 - -
Bma01g02585 351 Pfam Argininosuccinate lyase C-terminal 294 346 IPR029419 -
Bma01g02585 351 Gene3D - 289 348 - -
Bma01g02585 351 SUPERFAMILY L-aspartase-like 294 348 IPR008948 GO:0003824
Bma01g02585 351 Pfam Lyase 88 295 IPR022761 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02585 K01755 argH, ASL; argininosuccinate lyase [EC:4.3.2.1] - zju:107421276 340.887
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02585 Bma04g00431 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02585 Bma-Chr1:83471085 Bma07g00133 Bma-Chr7:2038545 2.23E-25 dispersed
Bma01g02585 Bma-Chr1:83471085 Bma04g00431 Bma-Chr4:3544928 6.51E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54