Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02587 ATGTTTTCCAAGCTCCATCACCGTCAACCTCAATCCCTCCCCTTTTCTAATCCCTTCCAAATCCCTGCAAGAGAATGTCATCACCCGGAGGAAGAAGAAGAAGTAAGCCCCGTATGTCGTACACCATCCAGAAAGACCTCCGAGCCATCCTCCGGCGACTGCGCCACGATTGAAGTTGTCAAACGCCCCCGTGGCCGGCCTCCTGGCTCCAAGAACAAACCCAAAACGGGGGTTGTTGTCGCTCGCGATCCGGAGCCTTCGATGAGCCCTTATATTCTCGAAGTTCCCGGAGGTAGTGATGTCGTCGAAGCCATTGCCCGCTTTTGCCGCCGAAAAAATATGGGGCTTTGTGTTCTCTCGGGCTCTGGCACGGTTTCTAACGTTACTCTACAGCAACCATCTACCACTCCCGAAGCGACGGTGACTTTTCATGGTCGGTTTCATATACTCTCCATCTGCGCCACTTCATTTCTGGTTCCCAATGGTTTTGCTGTCTATCTGGCTGGTCCTCAAGGCCAGGTCGTCGGCGGTTTAGTCTCTGGAAACTTGATTGCCGCCGGAAGTGTGTTCGTTATAGCTTCTTCGTTCGACAATCCGTCTTATCACCGACTTTCGGATGAGGATGAGACTAGAAACTCAGACGCTAGCGGTGGCGGTGAGAAAAATTCTCCTATAGTCTCCGGTGCTAGAGATAGTGTGAGTCACGCTCCAGCGGAATCGGGCGGCATGCCTACTTATAGCTGCCGCGTTCCCTCCGATGTAATATGGGCTCCCACTGCAAGAGCACCACCACCACCATACTAA 804 52.86 MFSKLHHRQPQSLPFSNPFQIPARECHHPEEEEEVSPVCRTPSRKTSEPSSGDCATIEVVKRPRGRPPGSKNKPKTGVVVARDPEPSMSPYILEVPGGSDVVEAIARFCRRKNMGLCVLSGSGTVSNVTLQQPSTTPEATVTFHGRFHILSICATSFLVPNGFAVYLAGPQGQVVGGLVSGNLIAAGSVFVIASSFDNPSYHRLSDEDETRNSDASGGGEKNSPIVSGARDSVSHAPAESGGMPTYSCRVPSDVIWAPTARAPPPPY 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83506095 83508835 + Bma003473.1 Bma01g02587 77104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02587 267 MobiDBLite consensus disorder prediction 24 39 - -
Bma01g02587 267 MobiDBLite consensus disorder prediction 1 83 - -
Bma01g02587 267 MobiDBLite consensus disorder prediction 201 249 - -
Bma01g02587 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 266 IPR014476 GO:0003680
Bma01g02587 267 ProSiteProfiles PPC domain profile profile. 85 217 IPR005175 -
Bma01g02587 267 Gene3D - 89 215 - -
Bma01g02587 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 24 266 - -
Bma01g02587 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 87 209 - -
Bma01g02587 267 MobiDBLite consensus disorder prediction 201 215 - -
Bma01g02587 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 198 IPR005175 -
Bma01g02587 267 MobiDBLite consensus disorder prediction 1 18 - -
Bma01g02587 267 CDD DUF296 90 194 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02587 Bma-Chr1:83506095 Bma02g01165 Bma-Chr2:53776721 4.92E-48 dispersed
Bma01g02587 Bma-Chr1:83506095 Bma02g00110 Bma-Chr2:1002028 5.85E-94 wgd
Bma01g02587 Bma-Chr1:83506095 Bma04g00433 Bma-Chr4:3552874 4.65E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02587 - - zju:107421268 349.362