Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02590 ATGGCACCTAGTTTTGACTGTGTAGCTTCAAGCCTTTTGTGTGAGGAAGATAACATTTTTGACGATTATGCGACGATCGACGACGAGTACGAGAAAAATGGAACCCAGTTCAAGAAACGAAGTTCTGAAGGCGGAGAAAGGCCGCCATTGATGAGCGATGAGTGTATAGCTCTGCTGGTCGAGAAGGAACGCCATTACTTACCTGAAGGTAATTACTTGAAGAGGCTGGAAAGTGGGGATTTGGATTTGGGGGCTAGAAAAGAGGCTGTTAAATGGATTCAGAAGGGTAGTGCTAGCTTCAATTTCGGACCTCTCTGTACATACCTGGCCATAAGCTGCTTGGATCGATTCCTCTCCATCTATGATCTGCCTAAAGGCAAAGCTTGGACGATGCATTTGGTATCGGTGGCATGTCTATCTCTCGCAGCCAAACTAGAGGAGACCGAAGTTCCTCTTTCTCTCGATTTACAGGTTGCTGTATCAAAATTTGTGTTTGAAGCTAAAACTATACAAAGAATGGAGCTTTTGGTTTTGAGCACATTAAATTGGAGAATGCAGGCTATTACCCCTTTTTCCTTCATAGACTTTTTCTTATGCAAGATTGGCGATGATCGAATGCCGTTTGGTCTTTCGTTGAGCAAAGCCTCTCGGTTGATACTACGCACAGTTCAAGATTCTTATTTTTTGGAATCCCGGCCGTCGGAAATCGCATTGGCTGTGGCCATATCTGTTGCCGGAGAAATCCAGGCCATTGATACCGACAAAGCAATTTCTACTCTCACCCACCATGACAAAGTGTTGGATTGTGTTAGAATGATCCAGGAAGTGTTATTAAAGAACGAGTCTGAAAATGATTCAAGAGCTTATATTCAATCTTTTCCCTCTAGTCCGAGCGGGGTGTTGGATGTTCTGTGCTTTAGCTCGACGAGTGACGGCTCGGATCAGAGTTTGTCCGGTAATAGTCGAGATCGTAAACGGAGGAATCGAACTCAAAACTGTAAATTGGAGCCATAG 1014 44.28 MAPSFDCVASSLLCEEDNIFDDYATIDDEYEKNGTQFKKRSSEGGERPPLMSDECIALLVEKERHYLPEGNYLKRLESGDLDLGARKEAVKWIQKGSASFNFGPLCTYLAISCLDRFLSIYDLPKGKAWTMHLVSVACLSLAAKLEETEVPLSLDLQVAVSKFVFEAKTIQRMELLVLSTLNWRMQAITPFSFIDFFLCKIGDDRMPFGLSLSKASRLILRTVQDSYFLESRPSEIALAVAISVAGEIQAIDTDKAISTLTHHDKVLDCVRMIQEVLLKNESENDSRAYIQSFPSSPSGVLDVLCFSSTSDGSDQSLSGNSRDRKRRNRTQNCKLEP 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83529174 83530939 + Bma003476.1 Bma01g02590 77107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02590 337 MobiDBLite consensus disorder prediction 318 337 - -
Bma01g02590 337 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 1 326 - -
Bma01g02590 337 SUPERFAMILY Cyclin-like 50 185 IPR036915 -
Bma01g02590 337 CDD CYCLIN 86 178 IPR013763 -
Bma01g02590 337 Gene3D - 69 186 - -
Bma01g02590 337 SMART Cyclin_C_2 188 309 IPR004367 -
Bma01g02590 337 Pfam Cyclin, N-terminal domain 55 185 IPR006671 -
Bma01g02590 337 Pfam Cyclin, C-terminal domain 188 289 IPR004367 -
Bma01g02590 337 MobiDBLite consensus disorder prediction 310 337 - -
Bma01g02590 337 PANTHER CYCLINS 1 326 IPR039361 -
Bma01g02590 337 Gene3D - 59 275 - -
Bma01g02590 337 SMART cyclin_7 91 179 IPR013763 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02590 Bma02g00120 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00063 Bma-Chr1:642030 Bma01g02590 Bma-Chr1:83529174 6.61E-64 dispersed
Bma01g02248 Bma-Chr1:79658785 Bma01g02590 Bma-Chr1:83529174 3.58E-36 dispersed
Bma01g02590 Bma-Chr1:83529174 Bma06g00632 Bma-Chr6:33527117 8.52E-55 dispersed
Bma11g00364 Bma-Chr11:3907335 Bma01g02590 Bma-Chr1:83529174 4.98E-36 dispersed
Bma12g00767 Bma-Chr12:34808349 Bma01g02590 Bma-Chr1:83529174 4.07E-42 dispersed
Bma15g00199 Bma-Chr15:2027740 Bma01g02590 Bma-Chr1:83529174 3.73E-30 dispersed
Bma03g01204 Bma-Chr3:18562205 Bma01g02590 Bma-Chr1:83529174 8.87E-40 transposed
Bma01g02590 Bma-Chr1:83529174 Bma02g00120 Bma-Chr2:1139056 8.81E-102 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02590 K18810 - qsu:112005182 360.918