Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02594 ATGGATTTCGATCAGGAGCACGAGGACCCCGAAGAGGAAATGGAGGAAATTCCGGAGCAGACGGCAGCTTTCGACTCGATGACATCTGAGAGGCTGAGAATGGGAGACGACGGCGGAGAAGGAACGTCCTCAACGAGAAAAATTATCCCCGGCGTAAGATACAGGGAATGCCTGAAGAACCACGCTGTAAACATCGGTGCCCACGCCGTGGACGGGTGTGGCGAGTTCATTGCCGCCGGAGAAGAGGGTACTTTAGACGGCCTGAAATGCGCTGCATGTAACTGCCACCGGAATTTCCACCGGAAAGAAACAGATACAGATCGCTCATTTCAACTGTACCACCATTATCAACAGCAGTATCACCACCCACAATTCTCTCCCTTCTACCGAGGGCCTCTACAACCATCTGGGTATCTTCACCTGGCCTCGTCTTCGATGCAGCAGCGGCCGTTGGCGTTGCCTTCGCCGTCCGGCGGAGGAGCGTTCAGCAGAAACGAAGAAGATACATCGAATCCAAGCAGTAGTGGAGGAGATGGAAGTGGGATGAGGAAGAGATTTAGATCCAAGTTTACTCAGGAACAGAAGGAAAAGATGTTGGCTTTCGCAGAGAGGCTTGGGTGGAGAATTCAGAAACACGACGAAGGAGCGGTGGATCAGTTTTGTGCAGAGAACTGTGTAAAACGACAGGTTTTCAAGGTTTGGATGCACAACAACAAGCACACACTTGGTAAGAAACCCTAA 741 51.42 MDFDQEHEDPEEEMEEIPEQTAAFDSMTSERLRMGDDGGEGTSSTRKIIPGVRYRECLKNHAVNIGAHAVDGCGEFIAAGEEGTLDGLKCAACNCHRNFHRKETDTDRSFQLYHHYQQQYHHPQFSPFYRGPLQPSGYLHLASSSMQQRPLALPSPSGGGAFSRNEEDTSNPSSSGGDGSGMRKRFRSKFTQEQKEKMLAFAERLGWRIQKHDEGAVDQFCAENCVKRQVFKVWMHNNKHTLGKKP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83562057 83562797 + Bma003480.1 Bma01g02594 77111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02594 246 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 239 IPR006455 -
Bma01g02594 246 MobiDBLite consensus disorder prediction 1 19 - -
Bma01g02594 246 MobiDBLite consensus disorder prediction 1 46 - -
Bma01g02594 246 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Bma01g02594 246 MobiDBLite consensus disorder prediction 162 178 - -
Bma01g02594 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 40 245 - -
Bma01g02594 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 245 - -
Bma01g02594 246 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
Bma01g02594 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Bma01g02594 246 MobiDBLite consensus disorder prediction 144 184 - -
Bma01g02594 246 SUPERFAMILY Homeodomain-like 170 244 IPR009057 -
Bma01g02594 246 Gene3D - 168 244 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02594 Bma-Chr1:83562057 Bma09g00128 Bma-Chr9:3877661 1.90E-82 dispersed
Bma01g02594 Bma-Chr1:83562057 Bma03g00988 Bma-Chr3:10644405 8.63E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56821 PF04770 ZF-HD_dimer 7.50E-29 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02594 - - pvy:116138504 295.434