Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02594 ATGGATTTCGATCAGGAGCACGAGGACCCCGAAGAGGAAATGGAGGAAATTCCGGAGCAGACGGCAGCTTTCGACTCGATGACATCTGAGAGGCTGAGAATGGGAGACGACGGCGGAGAAGGAACGTCCTCAACGAGAAAAATTATCCCCGGCGTAAGATACAGGGAATGCCTGAAGAACCACGCTGTAAACATCGGTGCCCACGCCGTGGACGGGTGTGGCGAGTTCATTGCCGCCGGAGAAGAGGGTACTTTAGACGGCCTGAAATGCGCTGCATGTAACTGCCACCGGAATTTCCACCGGAAAGAAACAGATACAGATCGCTCATTTCAACTGTACCACCATTATCAACAGCAGTATCACCACCCACAATTCTCTCCCTTCTACCGAGGGCCTCTACAACCATCTGGGTATCTTCACCTGGCCTCGTCTTCGATGCAGCAGCGGCCGTTGGCGTTGCCTTCGCCGTCCGGCGGAGGAGCGTTCAGCAGAAACGAAGAAGATACATCGAATCCAAGCAGTAGTGGAGGAGATGGAAGTGGGATGAGGAAGAGATTTAGATCCAAGTTTACTCAGGAACAGAAGGAAAAGATGTTGGCTTTCGCAGAGAGGCTTGGGTGGAGAATTCAGAAACACGACGAAGGAGCGGTGGATCAGTTTTGTGCAGAGAACTGTGTAAAACGACAGGTTTTCAAGGTTTGGATGCACAACAACAAGCACACACTTGGTAAGAAACCCTAA 741 51.42 MDFDQEHEDPEEEMEEIPEQTAAFDSMTSERLRMGDDGGEGTSSTRKIIPGVRYRECLKNHAVNIGAHAVDGCGEFIAAGEEGTLDGLKCAACNCHRNFHRKETDTDRSFQLYHHYQQQYHHPQFSPFYRGPLQPSGYLHLASSSMQQRPLALPSPSGGGAFSRNEEDTSNPSSSGGDGSGMRKRFRSKFTQEQKEKMLAFAERLGWRIQKHDEGAVDQFCAENCVKRQVFKVWMHNNKHTLGKKP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83562057 83562797 + Bma003480.1 Bma01g02594 77111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02594 246 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 239 IPR006455 -
Bma01g02594 246 MobiDBLite consensus disorder prediction 1 19 - -
Bma01g02594 246 MobiDBLite consensus disorder prediction 1 46 - -
Bma01g02594 246 Pfam ZF-HD protein dimerisation region 52 104 IPR006456 -
Bma01g02594 246 MobiDBLite consensus disorder prediction 162 178 - -
Bma01g02594 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 40 245 - -
Bma01g02594 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 40 245 - -
Bma01g02594 246 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 53 103 IPR006456 -
Bma01g02594 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Bma01g02594 246 MobiDBLite consensus disorder prediction 144 184 - -
Bma01g02594 246 SUPERFAMILY Homeodomain-like 170 244 IPR009057 -
Bma01g02594 246 Gene3D - 168 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02594 - - - pvy:116138504 295.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02594 Bma-Chr1:83562057 Bma09g00128 Bma-Chr9:3877661 1.90E-82 dispersed
Bma01g02594 Bma-Chr1:83562057 Bma03g00988 Bma-Chr3:10644405 8.63E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g479 . Blo12g00721 . . Bpe02g00132 . . Bma01g02594 Cmo05g00555 . . . . . Sed04g0182 . . Bhi04g00810 Tan02g2444 Cmetu03g1591 . Hepe10g0451 . Lcy13g1504 . . . . . . . . . Cone17ag1192 . . . . Cme03g01827 . . Bda11g00787 . . . . . . . . . Cma05g00527 Car05g00476 . Cpe11g00465 . . . . . . . . . . . . . . . Lsi08g01003 Csa02g02187 Chy03g01330 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma01g02594 . 1 242 ZF-HD Transcription Factor Family AT4G24660 52.1 3.1e-56 215.3
Bma09g00128 . 1 229 ZF-HD Transcription Factor Family AT4G24660 51.3 2.9e-54 208.8
Bma05g00124 BCT 91 287 ZF-HD Transcription Factor Family AT4G24660 50.3 1.1e-42 170.2
Bma02g00421 CCT 24 252 ZF-HD Transcription Factor Family AT5G39760 56.0 3.3e-51 199.1
Bma09g00128 . 43 233 ZF-HD Transcription Factor Family AT5G65410 54.5 1.2e-49 193.7
Bma01g02594 . 53 246 ZF-HD Transcription Factor Family AT5G65410 52.1 1.3e-45 180.3
Bma14g01426 . 58 244 ZF-HD Transcription Factor Family AT1G69600 53.6 1.0e-49 193.7
Bma02g00421 CCT 10 242 ZF-HD Transcription Factor Family AT5G15210 56.5 5.0e-50 194.9
Bma02g00421 CCT 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 4.9e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56821 PF04770 ZF-HD_dimer 7.50E-29 No_clan Bma TF