Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02596 ATGCAGAATTCCGAGGCTATATCGTATTTGAGCCAACGAGAAGCAGCTGAGGTCGATGAGATTCTTATGGGCCCTCTTGGGTTCAGCGTCGATCAGTTAATGGAATTGGCTGGGTTGAGCGTTGCGGCGTCTATAGCAGAGGTCTACAAGCCAGCTGAGTACAATAGGGTTCTGGCAATTTGTGGTCCTGGAAACAATGGCGGTGATGGTCTTGTGGCAGCTCGACATCTCTTTCACTTTGGATATAAACCATATGTTTGTTACCCAAAGAGGACTCCAAAGCCTCTATATGCTGGTCTCGTCACCCAGCTGGAATCACTGTCGGTCCCTTTTTTATCAGTGGAAGACATACCATCGGACTTATCCAATAATTTTGATATTCTAGTAGATGCAATGTTTGGTTTCTCCTTTCATGGTACGCCTAGGCCACCTTTTGATGGTCTGATAAAAACACTTGCCAGCTTGCATGATCAAGAAAGCCAAAAATTCCCTGTTATTGTTTCTGTTGATATTCCATCGGGGTGGCATGTTGAAGAAGGAGACCCAGGTGATGGCCTCAAACCTGACATGTTGGTTTCTTTAACCGCGCCAAAGCTGTGTGCAAAGAAATTCTCTGGCCCACACCACTTTTTAGGTGGTAGATTTGTGCCACCAGCGATTGTGGATAAATATAAACTTAAGCTACCTTCATATCCTGGCACTGCAATGTGCCTGCGAATTGGAAAAACTCCTCAGGTTGATATAGCAGCACTCAGAGAGAACTATATATCTCCTGTGTTTCTTGAAGATGAATTGGATACTGACCCCATTAATCAGTTTCGTAAATGGTTTGATGACGCAGTAGCTGCCGGCCTGCGGGAACCTAATGCTATGGCACTTTCAACTGCTGGTAGTGATGGAAAACCCTCATCCCGAATGGTGTTGCTGAAAGGAATTGACAAGGGTGGTTTTGTCTGGTACACTAATTATGAAAGTCAAAAAGCACATCAATTGTCTGAAAATCCCCATGCTTCACTTCTTTTCTACTGGGACGGTCTTAATCGGCAGGTGAGAGTGGAAGGTCCAGTTGAAAAAGTGTCTGAGGAGGAATCTGAGCAGTACTTCCATAGCCGCCCTCGAGGAAGTCAGATCGGTGCAATTGTTAGCCATCAGAGTTCCTTAGTACCTGGAAGACATGTTCTACACCAAAAATACAAAGAATTGGAAAAAATATTCTCGGATGGAAGTTTGATTCCGAAACCGGAACATTGGGGAGGATACAGGCTCAAACCAAGACTGTTCGAGTTTTGGCAAGGGCAACAATCTCGGTTGCATGACAGATTGCAGTATTCTCCTTGTGAGGTCAATGGAGAACAGGCTTGGAAAATTGAGCGATTGGCTCCCTGA 1386 45.02 MQNSEAISYLSQREAAEVDEILMGPLGFSVDQLMELAGLSVAASIAEVYKPAEYNRVLAICGPGNNGGDGLVAARHLFHFGYKPYVCYPKRTPKPLYAGLVTQLESLSVPFLSVEDIPSDLSNNFDILVDAMFGFSFHGTPRPPFDGLIKTLASLHDQESQKFPVIVSVDIPSGWHVEEGDPGDGLKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPAIVDKYKLKLPSYPGTAMCLRIGKTPQVDIAALRENYISPVFLEDELDTDPINQFRKWFDDAVAAGLREPNAMALSTAGSDGKPSSRMVLLKGIDKGGFVWYTNYESQKAHQLSENPHASLLFYWDGLNRQVRVEGPVEKVSEEESEQYFHSRPRGSQIGAIVSHQSSLVPGRHVLHQKYKELEKIFSDGSLIPKPEHWGGYRLKPRLFEFWQGQQSRLHDRLQYSPCEVNGEQAWKIERLAP 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83587774 83595441 - Bma003482.1 Bma01g02596 77113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02596 461 PANTHER NAD(P)H-HYDRATE EPIMERASE 1 446 IPR032976 -
Bma01g02596 461 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 417 461 IPR019576 -
Bma01g02596 461 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 242 461 IPR000659 GO:0004733|GO:0008615|GO:0010181
Bma01g02596 461 SUPERFAMILY YjeF N-terminal domain-like 8 234 IPR036652 -
Bma01g02596 461 Pfam Pyridoxamine 5'-phosphate oxidase 277 363 IPR011576 -
Bma01g02596 461 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 254 461 IPR000659 GO:0004733|GO:0008615|GO:0010181
Bma01g02596 461 Pfam YjeF-related protein N-terminus 31 200 IPR004443 -
Bma01g02596 461 Gene3D - 6 246 IPR036652 -
Bma01g02596 461 PANTHER NAD(P)H-HYDRATE EPIMERASE 1 446 - -
Bma01g02596 461 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 12 205 IPR004443 -
Bma01g02596 461 Gene3D - 256 451 IPR012349 -
Bma01g02596 461 ProSiteProfiles YjeF N-terminal domain profile. 15 228 IPR004443 -
Bma01g02596 461 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 427 440 IPR019740 GO:0016638
Bma01g02596 461 SUPERFAMILY FMN-binding split barrel 259 461 - -
Bma01g02596 461 Hamap NAD(P)H-hydrate epimerase [nnrE]. 11 217 IPR004443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02596 K23998 PPOX; pyridoxal 5'-phosphate synthase / NAD(P)H-hydrate epimerase [EC:1.4.3.5 5.1.99.6] - vvi:100267813 805.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02596 Bma-Chr1:83587774 Bma01g02730 Bma-Chr1:84662498 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g476 . . . . Bpe02g00130 Bpe04g00429 . Bma01g02596 . . Cma01g01633 . . . . . . . . . . . . . . . . . . . . Cone4ag1312 Cone7ag1255 . . Lsi04g02266 Csa03g04475 Chy04g00226 . . . Bda11g00785 . . . . . Sed05g1572 Cmo01g01678 . . . . . . . Bhi09g02478 Tan01g3831 . . Hepe01g2157 Mch11g0694 . Cla11g01409 Cam11g1466 Cec11g1494 Cco11g1490 Clacu11g1627 Cmu11g1444 Cre11g1863 . . . Cme04g00252
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004922 1 3 2 2 2 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 40