Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02601 CTCTCTATTTCTCGACCGCCGTTGGCGGGTTCTTCTCACTCTCGCACCTTTTCCTTAGGAAACGGACGAATAAGCAAATTCATTTTCCATGTTTCTTTAACTGCCCAAGAACAACCTCTTGATTCCACTTCAGTGGATGTTAGCGAGGGATTGGAGTCAGAGATTGAAGAATTTTCTCGTACTAGATTGATTGCCCAAAATTTGCTTTCCATGTATAACAAGACGAAAAATAGGGGCTTGGCATTTGTTTCAATGGGCTCGGCAGAGGATGCCCTCAACGCGCTCAATAATATGGAATCGTATGAATTAGAAGGTCGTACTTTGAAGGTCGCTTACGCCAAGCCAAAGAAGGCGAAACCAGTTCCCAAAGTACAGTCCAAACCTGTGACATTTAATTTGTTTGTGGCAAATTTACCTTATGGAGCAAGAGCAAAGGACCTCAGAGAATTCTTTGAATCTGGAAGCAACAATCTTGTTTCTGCACAAATTATTTTTCACGAAAATCCCAAAAGGTCCTTGGGGTATGGCTTTGTGGCATTCAAATCCAAGAAGGATGCCGAGGCTGCTCTCTTGGAATTCCAAGGGAAGGATTTCATGGGGAGGCCTCTTCGGGTGGCTCGAGGTAACCAATTTGTGAAAGTGCCAACAGAGGAAAAAACCCAATCTGAAATTACCTCAACCGACGATGTGATAGGGAACATCGACACAGCTTAG 714 43.98 LSISRPPLAGSSHSRTFSLGNGRISKFIFHVSLTAQEQPLDSTSVDVSEGLESEIEEFSRTRLIAQNLLSMYNKTKNRGLAFVSMGSAEDALNALNNMESYELEGRTLKVAYAKPKKAKPVPKVQSKPVTFNLFVANLPYGARAKDLREFFESGSNNLVSAQIIFHENPKRSLGYGFVAFKSKKDAEAALLEFQGKDFMGRPLRVARGNQFVKVPTEEKTQSEITSTDDVIGNIDTA 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83630677 83631884 + Bma003486.1 Bma01g02601 77118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02601 237 Gene3D - 40 124 IPR012677 -
Bma01g02601 237 Gene3D - 125 214 IPR012677 -
Bma01g02601 237 SUPERFAMILY RNA-binding domain, RBD 73 207 IPR035979 GO:0003676
Bma01g02601 237 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 69 228 - -
Bma01g02601 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 115 IPR000504 GO:0003723
Bma01g02601 237 PANTHER OS08G0483200 PROTEIN 69 228 - -
Bma01g02601 237 MobiDBLite consensus disorder prediction 218 237 - -
Bma01g02601 237 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 210 IPR000504 GO:0003723
Bma01g02601 237 SMART rrm1_1 132 206 IPR000504 GO:0003723
Bma01g02601 237 SMART rrm1_1 32 111 IPR000504 GO:0003723
Bma01g02601 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 109 IPR000504 GO:0003723
Bma01g02601 237 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 204 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02601 - - - csv:101208444 253.447
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02601 Bma-Chr1:83630677 Bma12g01062 Bma-Chr12:42806983 1.46E-15 dispersed
Bma01g02601 Bma-Chr1:83630677 Bma04g01022 Bma-Chr4:17949022 3.27E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g454 . Blo12g00716 . . Bpe02g00125 . . Bma01g02601 . . . . . . . Cpe06g00441 . . . . . . . . . . . . . . . . Cone7ag1262 . . Lsi04g02259 Csa03g04470 Chy04g00231 . . . Bda11g00780 . . . . . Sed13g2155 . . . . . Car09g00508 . Cpe02g00355 Bhi09g02471 Tan01g3820 Cmetu04g0043 . Hepe01g2151 Mch11g0689 . Cla11g01404 Cam11g1461 Cec11g1489 Cco11g1485 Clacu11g1622 Cmu11g1439 Cre11g1858 . . . Cme04g00257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009555 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32