Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02608 ATGGCGTCCTCTAGTTCTATGCTTGTGAATCTGGCGCTGCTGTTTTCGATGCTTCATTTAAGCTTGGGAGCGAGGACTCTCACTGAGTCGTCGGAACAGCCATTGCTATTTAAGTACCACAAAGGTCCTCTTCTGACCGGGAACGTCACCGTCAATCTCATTTGGTACGGCAAGTTCAAGCCATATCAGCGAGCCATTATCACTGATTTCATCTCCTCGCTTTCTCCTTCTTCCAAAACCTCAGGTCAACCCTCGGTTGCGAAGTGGTGGAAAGCTACTGAGAAATTCTACCATTTAACCGGCCTAAAGAAGAACTCAAATTTCCTTTCCCTTCCGTTTGGAACTCATATTTTGGACGAGAAATACTCTCTCGGAAAATCCCTCACCACCGAGAAGATCGTCCGGTTAGCATCAAAGGGCGGCCAGAAATACGCCATTAACGTGGTACTGACGGCAAGCGACGTCGCCGTCGATGGATTCTGCATGAACCGGTGCGGCTCTCACGGCTCTTCGATCGGAGCTTCAATGGCGGGCAAGAGACACAAGTTCGCCTACATTTGGGTCGGAAACTCGGAGACTCAATGCCCTGGTCAATGTGCATGGCCTTTCCACCAGCCAATCTACGGACCACAAACACCGCCTCTGGTGGCGCCAAATAACGATGTTGGGATGGACGGAATGGTAATCAACCTGGCTAGCCTTTTGGCCGGAACTGTGACGAACCCATTCGGAAATGGATACTTTCAGGGACCGAAGGAGGCGCCACTGGAAGCGGGGTCGGCGTGTACTGGGGTTTACGCGAAAGGGGCTTACCCAGGCTATCCAGGAGAGCTCTTAGTCGATCCTGCTACTGGTGCAAGCTTCAACGCTCATGGCGTTAATGGAAGAAAATACTTGCTTCCTGCTTTATTTGATCCATCTACCTCTACCTGTTCACCTCTGATTTAA 948 50.63 MASSSSMLVNLALLFSMLHLSLGARTLTESSEQPLLFKYHKGPLLTGNVTVNLIWYGKFKPYQRAIITDFISSLSPSSKTSGQPSVAKWWKATEKFYHLTGLKKNSNFLSLPFGTHILDEKYSLGKSLTTEKIVRLASKGGQKYAINVVLTASDVAVDGFCMNRCGSHGSSIGASMAGKRHKFAYIWVGNSETQCPGQCAWPFHQPIYGPQTPPLVAPNNDVGMDGMVINLASLLAGTVTNPFGNGYFQGPKEAPLEAGSACTGVYAKGAYPGYPGELLVDPATGASFNAHGVNGRKYLLPALFDPSTSTCSPLI 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83661790 83662737 - Bma003493.1 Bma01g02608 77125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02608 315 Pfam Phosphate-induced protein 1 conserved region 38 312 IPR006766 -
Bma01g02608 315 PANTHER PROTEIN EXORDIUM-LIKE 5 2 315 IPR006766 -
Bma01g02608 315 PANTHER PHOSPHATE-RESPONSIVE 1 FAMILY PROTEIN 2 315 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02608 - - - qsu:112007089 478.404
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02608 Bma02g00137 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02608 Bma-Chr1:83661790 Bma05g00595 Bma-Chr5:36133492 6.93E-124 dispersed
Bma12g00882 Bma-Chr12:40050919 Bma01g02608 Bma-Chr1:83661790 6.24E-42 dispersed
Bma01g02608 Bma-Chr1:83661790 Bma01g02609 Bma-Chr1:83666351 1.62E-144 tandem
Bma01g01400 Bma-Chr1:22090715 Bma01g02608 Bma-Chr1:83661790 5.88E-105 wgd
Bma01g02608 Bma-Chr1:83661790 Bma02g00137 Bma-Chr2:1233545 1.37E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g432 . . . . . . . Bma01g02608 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1328 Cone7ag1269 . . Lsi04g02243 . . Cme03g01857 . Blo18g00130 . Bda13g01397 . . . Bma02g00137 . . . Cma12g00164 . . . . Cpe02g00368 Bhi09g02446 Tan01g3798 Cmetu04g0771 . Hepe01g2135 Mch11g0673 . . . . . . . . . . Chy03g01359 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88