Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02620 ATGGTGAACTACGCCGAGAGAAATGACTCGGCCTGCTTATGCTTATCGCGGATTTTCCGCCGTCGATGCCCAAATAAATCGTCAGCGTACTCACTTCCGACAAACAAGTCGCCCAAAACTGCTAAAGTTTCAGCAGTAGAAACAGAGACCAAACTGGTCGTTGATAACCCTGCCGCCGATCAGCCAAAACCACCGCCCTCTCAACAAAACTATCAAATTCGACGGCTTTCCGATGCCCCAGCTAGAAGCTCAACATCATCATCCTCCACTATTTCCAGCCAAGCTAAGGTGAGTCATCCCAAATCTCCTGTTCTTGGTCACATAGGTAACTTGCGAATGGCCGGAAATGGCAATCTATCCGCAGGCAATACTCCCAAAGCCTCAAAAAAAGAAATAATTACCTCTCTCTCTAAAATTAGCGAGAGTGGAAACATGGGCAACATTTTTGGACAATTTCATGGTCTTCGAAGTAAAATTGACCCAGACACTTTAAAATCCATGGGAAACGAGGCTTACAATATGGGTAGATTCGAGGAGGCTTTGAATTTGTATGACCGAGCTACAGCTTTGGATCCTGACAACGCCGTCTATCACTGTAACAAAAGCGCCGCTCTAATGAGCTTAGACCGGCTAGCTGAGGCCGTTGACGAGTGCCGGCTGGCCATTCGGATTCAACCTTCTCATTGCAGAGCTCATCACCGATTAGCAACGTTGTACCTCAGACTGGGAGAAACAGAGAAAGCATTATATCACTTCGGAGAAACAGGCAATTGTGGTGAAGATAAAGACATTAACAAAACGTACGCTCTTCAGAATTGCCTGTCCAGTTGCTCTGAAGCTAGACAATCACAATCATGGAAAATTCTGCTGAAAGAGACGCAGCTAGCAATCTCCATGGGAGCCAAATCATCTCATAAGGTGTATGTCCTGCAATCGGAGGCGTTACTAAGGCTTCGAAGGCATCAACAGGCTTACGCAGCCTGCGAGAGGGGTCGAAATCTGAGAAATGAGTTCGCCAAGGTGATCGACATTGCCGACAGAGCTTACCCTTTAATGATCCAAGCTCAGATTTACTTGACAATAGGAAGATTTGAGGAGGCTCTGTTAGCAGCCCAACAAGCGGCGGAAATCGATCCGACCAATGTGGAGATTAGCGCGGTGGCGAAGAGGGTCCGAACCATTTCGTCGGCGCGATTGAGCGGCAATCTACTGTTCAAAGCTTCGAGATTCTCCGAAGCATGTGTTGCATACAGCGAAGGACTAGAGCTAGATCCATACAACTCGGTTTTACTGTGCAACAGAGGGACATGTCGGTCAAAGCTTGGTCAATTCGAGAAAGCTATCGAAGACTGCTCCGTGGCTCTTAGCGTTCAACCTTCGTACAGAAAAGCCAGGCTTCGCAGGGCCAATTGTAATGCGAAATTGGAGAGGTGGGAGGCTTCGATTCAGGACTATGAAGTGCTGATAAGAGAGATGCCTGCCAATGAGGAGGTGGGAAGGGGTTTGTTTGAAGTAAAACTGCAGCTCAAGAAACAGAGAGGGGAAGATGTTAGAGACATGAAATTTGGCTCCAATGTGGTGTCTATTTCTAGCAATGATCGTTTCAGGCACTTCATCACATCTCCTGGGATGACGGTGGTTCTTTTCTGCCAAAAAAGAACCCATAAAAAAGAGTTGCAGGTCATGGAGAAAGTCTGCCGTAGATTCCCATCGGTAAACTTCCTCCAGGTAGAGATAGAAGACCATCCCTTCCTAGCAAAATCAGAGGGAGTGAGTTCAATTCCAGCCTTCAAAATATACAAGAATGGATCAAGCGTCCGAGAATTTTCTGCCGCCGGCCCAGAATCGTTAGAAAGCGCCGTCATATTGTTTAGCAGTTGA 1881 47.05 MVNYAERNDSACLCLSRIFRRRCPNKSSAYSLPTNKSPKTAKVSAVETETKLVVDNPAADQPKPPPSQQNYQIRRLSDAPARSSTSSSSTISSQAKVSHPKSPVLGHIGNLRMAGNGNLSAGNTPKASKKEIITSLSKISESGNMGNIFGQFHGLRSKIDPDTLKSMGNEAYNMGRFEEALNLYDRATALDPDNAVYHCNKSAALMSLDRLAEAVDECRLAIRIQPSHCRAHHRLATLYLRLGETEKALYHFGETGNCGEDKDINKTYALQNCLSSCSEARQSQSWKILLKETQLAISMGAKSSHKVYVLQSEALLRLRRHQQAYAACERGRNLRNEFAKVIDIADRAYPLMIQAQIYLTIGRFEEALLAAQQAAEIDPTNVEISAVAKRVRTISSARLSGNLLFKASRFSEACVAYSEGLELDPYNSVLLCNRGTCRSKLGQFEKAIEDCSVALSVQPSYRKARLRRANCNAKLERWEASIQDYEVLIREMPANEEVGRGLFEVKLQLKKQRGEDVRDMKFGSNVVSISSNDRFRHFITSPGMTVVLFCQKRTHKKELQVMEKVCRRFPSVNFLQVEIEDHPFLAKSEGVSSIPAFKIYKNGSSVREFSAAGPESLESAVILFSS 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83775818 83778174 + Bma003505.1 Bma01g02620 77137

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02620 626 SUPERFAMILY TPR-like 160 510 IPR011990 GO:0005515
Bma01g02620 626 MobiDBLite consensus disorder prediction 65 99 - -
Bma01g02620 626 Pfam Thioredoxin 555 619 IPR013766 -
Bma01g02620 626 CDD TRX_family 535 621 - -
Bma01g02620 626 ProSiteProfiles TPR repeat region circular profile. 161 194 - -
Bma01g02620 626 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 43 622 IPR044534 -
Bma01g02620 626 Gene3D Tetratricopeptide repeat domain 160 514 IPR011990 GO:0005515
Bma01g02620 626 Pfam Tetratricopeptide repeat 354 381 IPR019734 GO:0005515
Bma01g02620 626 ProSiteProfiles TPR repeat profile. 348 381 IPR019734 GO:0005515
Bma01g02620 626 SUPERFAMILY Thioredoxin-like 517 617 IPR036249 -
Bma01g02620 626 Coils Coil 461 488 - -
Bma01g02620 626 ProSiteProfiles TPR repeat profile. 161 194 IPR019734 GO:0005515
Bma01g02620 626 MobiDBLite consensus disorder prediction 26 111 - -
Bma01g02620 626 PANTHER INACTIVE TPR REPEAT THIOREDOXIN TTL3-LIKE PROTEIN 43 622 - -
Bma01g02620 626 Pfam TPR repeat 168 204 - -
Bma01g02620 626 Gene3D Glutaredoxin 518 624 - -
Bma01g02620 626 SMART tpr_5 462 495 IPR019734 GO:0005515
Bma01g02620 626 SMART tpr_5 348 381 IPR019734 GO:0005515
Bma01g02620 626 SMART tpr_5 161 194 IPR019734 GO:0005515
Bma01g02620 626 SMART tpr_5 428 461 IPR019734 GO:0005515
Bma01g02620 626 SMART tpr_5 195 228 IPR019734 GO:0005515
Bma01g02620 626 SMART tpr_5 305 338 IPR019734 GO:0005515
Bma01g02620 626 SMART tpr_5 229 262 IPR019734 GO:0005515
Bma01g02620 626 SMART tpr_5 394 427 IPR019734 GO:0005515
Bma01g02620 626 Pfam Tetratricopeptide repeat 417 449 - -
Bma01g02620 626 MobiDBLite consensus disorder prediction 27 44 - -
Bma01g02620 626 ProSiteProfiles TPR repeat profile. 428 461 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02620 K09527 DNAJC7; DnaJ homolog subfamily C member 7 - csv:101206173 665.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02620 Bma-Chr1:83775818 Bma14g00248 Bma-Chr14:2964029 4.78E-126 dispersed
Bma06g00140 Bma-Chr6:1802171 Bma01g02620 Bma-Chr1:83775818 9.92E-126 transposed
Bma07g00273 Bma-Chr7:3322784 Bma01g02620 Bma-Chr1:83775818 4.85E-06 transposed
Bma07g00725 Bma-Chr7:18740357 Bma01g02620 Bma-Chr1:83775818 3.76E-14 transposed
Bma09g00038 Bma-Chr9:840938 Bma01g02620 Bma-Chr1:83775818 7.03E-121 transposed
Bma01g02620 Bma-Chr1:83775818 Bma05g01405 Bma-Chr5:53426257 1.57E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g393 . Blo12g00702 . Bda03g00496 Bpe02g00100 Bpe04g00451 . Bma01g02620 . . Cma01g01421 Cma09g00648 . . . Cpe06g00508 . . . . . . . . . . . . . . . Cone4ag1347 Cone7ag1584 . . Lsi04g02348 Csa04g01848 . . . . Bda11g00760 . . . . . Sed12g1412 Cmo01g01471 Cmo09g00631 . . . Car09g00576 . Cpe02g00525 Bhi09g02612 Tan01g3963 Cmetu07g1933 . Hepe01g2241 Mch11g0789 . Cla11g01498 Cam11g1554 Cec11g1586 Cco11g1582 Clacu11g1712 Cmu11g1531 Cre11g1947 . . Chy07g00705 Cme07g00929
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005323 2 1 2 2 2 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39