Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02622 TTAGCATTTAGATTATATGCATTTACGTATGATATGGATTCTCGAGGACGAGTTTTATTTGATCTCAATGAACCTCCAGCTGAGGATAATGAAGTTAGTGACAGTGTTGTCTACCTGCCACAGAAGGCTATTCCTTCTTCAAATCCCCACTCATCGGATTTGTTTTCAGAGGTAGATGGTAATCATAAAATAGTAAATAATTTTGCTTTTTCACATGCTTCTTCAGTCTCTGGATTTCAGCCTTTTGTTCTAACAAAATCTGCTCATCACCCTGTTGTGGTTGAAGATCTTGAGAAAGTCGAGCGTCATTACTCTAAGATTGCATCGTCATCCAATTCAAGTAAGGATGAAAGGATGGCCGCATCATTTGCATCAGGTTCTAGAGAGGCTCAATGTGAGGACAGGGAAGAAGGAGAATGGTCTGATGCCGAGGGCGAGGCTGATGCATCTGCAGGAACTAGTTTGCAGACTCAGTCTAAAGGTGTGAAACAGCGAGAACTACTGTCTATATCCAGTGCAACTGTTGATACCAGTTCTTTAAATCCCCAAAACTCTGATTTTATAAGAGATGAAAGTGCTATTCCTGTTTCGTTAGAATCAGAGATAGATCTCGTTGACCAAAAAAGCAATGGAAGCAGGACTGTGGAATGGAATGCTAAAGGTGATATCCCAATGGATGACCAGGCAGAGCTAGTATCTGCTAAAAAACAAAGAGAAGTTAAAGGTATTGAAGCTACTCATGCACTGAAATGTGCTAATAATTCTGGTAAAAGAAAAGTAGATCAGCAACAGGAAGCTAAGCTTGGAAAGAAAAGAAGTAGACAGACCATGTTTCTTAATTTAGAGGATGTAAAGCAGGCTGGCCCTATGAAATCCTCAACCCCAAGGAGGCAGGCCATTCTGCCACCAATTATGACTCGTACAGTGAAAGAAATTCGTACTGCTGCTCCACTCACTGAACGAGCTGGTGAAAGACAGCAACTTCCTAACAAGGATCTAAAACTGGGTGATATATCATGTGATGAAGGTGGTAATCCATTGGAAACGGGAGAATTCAGATCTGATTCCAATGGCGATGGCAATTTAGGTCACGTAGCTAAGCCAAGTAGGCTAAATGGGAATGGAGATTTTTCTGTAGACATTTCCCTGCCACCTATTTCTAGACAGGGTACGTGGAAACAACCAACAGATTCAAGACAGTTAAAGAATATACAGGTTAGTAATAGGAAACCAGCTCAAACAAGTCAAAATTCAATGGAAACAAAAGTAGTAACCAAGAAACATCTTCCTGCTAAAAAGCAAAGTGCTATTAATACACAATATCAGGACACATCAGTTGAAAGACTCATACGGGAGGTGACCAATGAGAAGTTTTGGCGTAATCCAGGGGAGACCGAACTTCAATGTGTTCCTGGTCGATTTGAATCTGTAGAAGAATATGTCAGAGTGTTCGAACCTTTATTATTTGAAGAATGCCGTGCTCAGCTTTACAGTACGTGGGAGGAATTAACTGAAACAGTATCAAGGGACACACACGTGGTGGTTCGCATAAAGAACATTGAAAGAAGAGAAAGAGGGTGGTATGATGTGATAGTCCTTCCTGTAAATGAGTGCAAGTGGTCTTTCAAGGAGGGTGATGTTGCGATTCTTTCATCTCCCAGGACTGGACCAGTAAAGTCAAAGCGAAATAATACATCCTCAATGGAAGAAAATGATGAGCTTGAATGTAGTGAACGGGTTGCTGGAACAGTTCGACGGCACATTCCTATTGACACTCGCGATCCTCCTGGTGCAATCCTTCATTTTTATGTTGGTGACTCTTATGATTCTATTAAAGTTGATGATGATCATTTATTAAGGAAACTTCATACCAAAGGTGTGTGGCATCTGACAGTGCTTGGTTCCATTGCAACTACCCAACGGGAGTACATTGCCCTGCACGCATTTCGTCGTTTGAATTCACAGATGCAAGCTTCAATCCTTCAACCCAGTCCAGAGCCTAAGCTATGTCCAAAACCTAGAATGTTAGTTTGTGCACCTTCTAATGCTGCAACTGATGAGTTGCTTGCACGTGTTCTTAATCGTGGATTCATTGATGGCGAGATGAAAGTTTATCGACCTGATGTAGCTCGAGTTGGTGTCGACTCTCAAACTCGTGCTGCTCAAGCAGTTTCTGTGGAGAGGAGAACAGAACAACTTTTAATGAAAAGTAGAGAGGAAATTTTAGGATGGATGCACCAGCTCAAAGCTCGTGAAGCTCAATTATCTCAGCAGATATCAATTCTTCAAAGAGAACTAAATGCTACTGCCGCTGCTATTCGTACTCAAGGATCTATGTCTCGCCTCCTCATTCTGGAAAGCAAGTTCCGAGCTGGGAGCAACTTTAATTTGGAAGAAGCACGTGCTAATCTTGAGGCAAGCTTTGCCAATGAGGCTGAGATTGTTTTTACTACTGTCTCAAGCAGTGGTCGTAAATTGTTCTCTCGCCTTACTCATGGTTTTGATATGGTGGTTATAGACGAAGCAGCTCAAGCCAGTGAAGTGGCTATTCTTCCTCCGCTCTCTCTTGGTGCAGCACGATGTGTGCTTGTGGGAGATCCTCAGCAGCTTCCAGCTACTGTTATCAGCAAGGCTGCTGGAACCTTGCTTTACAGTAGGAGCCTTTTTGAGAGGTTCCAGCAAGCAGGATGTCCAACAATGTTGTTATCTGTACAGTATAGGATGCATCCGCAGATCCGGGATTTCCCTTCAAGGTACTTCTATCAAGGACGCCTTACTGACAGTGAAAGTGTTGCTAATTTACCAGATGAAGCTTACTACACGGACCTTCTACTTAAACCTTATGTCTTCTATGATATTACCCATGGACGGGAATCTCATAGAGGAGGGTCTGTGTCGTATCAAAACATTCATGAAGCACAATTTTGCCTTCGATTGTACGAGCATCTCCAGAAAACTCTGAAATCATTGGGGATGGGAAAAATTTCTGTTGGTATCATCACACCATACAAGCTACAACTAAAATGTCTTCAACGTGAGTTTGAGGATGTTCTGAGTACAGAAGAAGGGAAAGACCTGTACATAAACACTGTTGACGCATTTCAGGGCCAAGAGCGAGATGTGATCATCATGTCCTGTGTACGAGCCTCCGTTCACGGTGTTGGCTTTGTTGCAGATATTCGTCGCATGAATGTTGCACTTACACGTGCAAGAAGGTCTCTTTGGGTTATGGGCAATGCTAGTGCTTTGGTGCAATCTGATGACTGGGCTGCATTGATCACTGATGCCAAAGGAAGAAACTGTTATATGAATATGGAATCCCTTCCAAAAGACTTTATGGTATCCAAAGGTCCTGTTTACGCTGGATTGCCAAAGATCTCCTCAAATATGAGGGGTTTGAGGTTAACTGGGTCAAGACACAGGTCTTTAGACATGCACGTAGAGTCTGGGTCTGGAACTCCATCAGAAGATGATGAGAAGTCCAATTCATACTCTAGGAATGGAATCTACCGGCCCTTGAAGCCACCTATTGAGAATTCCTCAGATGACTTTGATCAATCAGGTGATAGAACAAAAGATGCCTGGCAATCTGGCACACAAAAGAAGCAAAGTTCTGGAAATGGTGGAAATATTCGGTGA 3639 42.57 LAFRLYAFTYDMDSRGRVLFDLNEPPAEDNEVSDSVVYLPQKAIPSSNPHSSDLFSEVDGNHKIVNNFAFSHASSVSGFQPFVLTKSAHHPVVVEDLEKVERHYSKIASSSNSSKDERMAASFASGSREAQCEDREEGEWSDAEGEADASAGTSLQTQSKGVKQRELLSISSATVDTSSLNPQNSDFIRDESAIPVSLESEIDLVDQKSNGSRTVEWNAKGDIPMDDQAELVSAKKQREVKGIEATHALKCANNSGKRKVDQQQEAKLGKKRSRQTMFLNLEDVKQAGPMKSSTPRRQAILPPIMTRTVKEIRTAAPLTERAGERQQLPNKDLKLGDISCDEGGNPLETGEFRSDSNGDGNLGHVAKPSRLNGNGDFSVDISLPPISRQGTWKQPTDSRQLKNIQVSNRKPAQTSQNSMETKVVTKKHLPAKKQSAINTQYQDTSVERLIREVTNEKFWRNPGETELQCVPGRFESVEEYVRVFEPLLFEECRAQLYSTWEELTETVSRDTHVVVRIKNIERRERGWYDVIVLPVNECKWSFKEGDVAILSSPRTGPVKSKRNNTSSMEENDELECSERVAGTVRRHIPIDTRDPPGAILHFYVGDSYDSIKVDDDHLLRKLHTKGVWHLTVLGSIATTQREYIALHAFRRLNSQMQASILQPSPEPKLCPKPRMLVCAPSNAATDELLARVLNRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLMKSREEILGWMHQLKAREAQLSQQISILQRELNATAAAIRTQGSMSRLLILESKFRAGSNFNLEEARANLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVAILPPLSLGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVANLPDEAYYTDLLLKPYVFYDITHGRESHRGGSVSYQNIHEAQFCLRLYEHLQKTLKSLGMGKISVGIITPYKLQLKCLQREFEDVLSTEEGKDLYINTVDAFQGQERDVIIMSCVRASVHGVGFVADIRRMNVALTRARRSLWVMGNASALVQSDDWAALITDAKGRNCYMNMESLPKDFMVSKGPVYAGLPKISSNMRGLRLTGSRHRSLDMHVESGSGTPSEDDEKSNSYSRNGIYRPLKPPIENSSDDFDQSGDRTKDAWQSGTQKKQSSGNGGNIR 1212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83787149 83793338 + Bma003507.2 Bma01g02622 77139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02622 1212 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 12 666 - -
Bma01g02622 1212 Coils Coil 745 765 - -
Bma01g02622 1212 MobiDBLite consensus disorder prediction 106 163 - -
Bma01g02622 1212 Gene3D - 906 1113 IPR027417 -
Bma01g02622 1212 MobiDBLite consensus disorder prediction 554 576 - -
Bma01g02622 1212 MobiDBLite consensus disorder prediction 1144 1164 - -
Bma01g02622 1212 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 669 778 - -
Bma01g02622 1212 Pfam AAA domain 650 877 IPR041677 GO:0004386
Bma01g02622 1212 Pfam AAA domain 884 1080 IPR041679 -
Bma01g02622 1212 Gene3D - 639 905 IPR027417 -
Bma01g02622 1212 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN-RELATED 779 1178 - -
Bma01g02622 1212 MobiDBLite consensus disorder prediction 344 363 - -
Bma01g02622 1212 PANTHER DNA2/NAM7 HELICASE FAMILY 669 778 IPR045055 -
Bma01g02622 1212 PANTHER DNA2/NAM7 HELICASE FAMILY 12 666 IPR045055 -
Bma01g02622 1212 CDD SF1_C_Upf1 908 1097 IPR041679 -
Bma01g02622 1212 MobiDBLite consensus disorder prediction 106 120 - -
Bma01g02622 1212 MobiDBLite consensus disorder prediction 407 423 - -
Bma01g02622 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 1108 IPR027417 -
Bma01g02622 1212 MobiDBLite consensus disorder prediction 407 428 - -
Bma01g02622 1212 MobiDBLite consensus disorder prediction 1144 1212 - -
Bma01g02622 1212 MobiDBLite consensus disorder prediction 1191 1212 - -
Bma01g02622 1212 CDD DEXXQc_SETX 667 907 - -
Bma01g02622 1212 PANTHER DNA2/NAM7 HELICASE FAMILY 779 1178 IPR045055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02622 - - K10706 qsu:112038045 933.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02622 Bma-Chr1:83787149 Bma04g01704 Bma-Chr4:53271096 1.42E-70 dispersed
Bma08g00857 Bma-Chr8:46667869 Bma01g02622 Bma-Chr1:83787149 3.61E-20 dispersed
Bma01g02622 Bma-Chr1:83787149 Bma05g01401 Bma-Chr5:53398027 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37