Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02630 ATGAGCAATTTGAGGGCAATCTGTAGGCCGTACACGGTGTTTTCATCTTTCATATTTAGCGGCAGCAGACGGCAAGTTCGGTCGAGGGTTGCGTTTCGAAACTCCAATTACCATCCCCGGTTCGATTTTTTTTCCAGCGGGTTCTGTATGGCTGACCGGTGGTTCGGTGTTCATCAGAGGAGGACGCTTGTTCAAGCTTCGAAATGGAGTGACCTGAAAACTCCCTACGAAACACTTGAGCTAGAAAGAGATGCTGATGAGGAGCAGATAAAGGTAGCTTACAGGCGGTTGGCCAAGTTTTATCATCCAGATGTCTATGATGGTAGAGGAACACTTGAGGAAGGTGAAACTGCTGAAGCAAGATTCATTAAGATCCAAGCAGCCTATGAGTTGCTCGTAGATGAAGAGAAGAGGAGTCAATATGATATAGATAATCGAGTTAACCCAATGAAGGCTTCTCAAGCATGGATGGAGTGGCTTATAAAAAAGCGAAAAGCTTTTGATCAGCGTGGTGATATGGCGATAGCTGCTTGGGCAGAACAGCAGCAGCGTGAGTTACATCTTCGCGTACGTCGCCTTTCTCGATCAAAGGTAATTGATCCCGATGAAGAGAGAAGAATCCTAGCAAAGGAGAAAAAGGCGTCAGCCGAGTATTTTAACAGTACGCTTAAGAGGCATACACTTATCCTAAAGAAGAGGGACCTGATGAGGAAGAAAGCAGAGGAGGACAAGAAAAAGGTCATAAGTCAGCTATTAGCTGCAGAGGGACTCGAGCTGGATCCAGACGACGAGGAAGGCTCCTAA 804 46.27 MSNLRAICRPYTVFSSFIFSGSRRQVRSRVAFRNSNYHPRFDFFSSGFCMADRWFGVHQRRTLVQASKWSDLKTPYETLELERDADEEQIKVAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLVDEEKRSQYDIDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIAAWAEQQQRELHLRVRRLSRSKVIDPDEERRILAKEKKASAEYFNSTLKRHTLILKKRDLMRKKAEEDKKKVISQLLAAEGLELDPDDEEGS 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83860153 83862240 + Bma003515.1 Bma01g02630 77147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02630 267 ProSiteProfiles dnaJ domain profile. 74 145 IPR001623 -
Bma01g02630 267 PRINTS DnaJ domain signature 76 94 IPR001623 -
Bma01g02630 267 PRINTS DnaJ domain signature 163 182 IPR001623 -
Bma01g02630 267 PRINTS DnaJ domain signature 117 137 IPR001623 -
Bma01g02630 267 PRINTS DnaJ domain signature 94 109 IPR001623 -
Bma01g02630 267 SMART dnaj_3 73 137 IPR001623 -
Bma01g02630 267 Pfam DnaJ domain 75 142 IPR001623 -
Bma01g02630 267 SUPERFAMILY Chaperone J-domain 65 143 IPR036869 -
Bma01g02630 267 CDD DnaJ 74 134 IPR001623 -
Bma01g02630 267 Coils Coil 76 96 - -
Bma01g02630 267 PANTHER LD30543P 38 263 - -
Bma01g02630 267 ProSitePatterns Nt-dnaJ domain signature. 122 141 IPR018253 -
Bma01g02630 267 PANTHER CO-CHAPERONE PROTEIN DJLA 38 263 - -
Bma01g02630 267 Gene3D DnaJ domain 62 168 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02630 - - - qsu:112023231 388.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02630 Bma-Chr1:83860153 Bma10g00819 Bma-Chr10:13997174 9.37E-11 dispersed
Bma01g02630 Bma-Chr1:83860153 Bma08g00760 Bma-Chr8:44594133 1.54E-10 transposed
Bma01g02630 Bma-Chr1:83860153 Bma03g00601 Bma-Chr3:4952437 3.20E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g345 . . . . Bpe02g00088 . . Bma01g02630 . . . . . . Sed04g0058 . . Bhi04g00721 Tan02g2350 Cmetu03g2083 . . . . Cla08g01081 Cam08g1532 Cec08g1108 Cco08g1235 Clacu08g1237 . Cre08g1018 . . . . . . . Cme03g01491 . . Bda11g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00937 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005322 1 1 0 1 1 3 1 3 1 1 2 3 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 2 1 40