Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02631 ATAATCTTTGCCAAATCAATGGCGGAGTCGGCATCAGACGCTTGTAATTTTCATACCCAGATCGTAATCAAGCCTCCGCCACTGCCATTCCCAGCCGATTCCCTCGAAAACCTCCAAGAAGATCGAATTCCTTTCTTTCATTCGGGTTCTCGCCGCCGACGGGGTGATACCTGGGTCATCTCCGTCTTCGTGATCCTCCATATCTTGGTCTTCGTAGCCACCATGTTCGTCAATGACTGCTGGCGTAACTCTCATCAACAGTGTGCTCTCAAGTCTCTAGGGAGATTTTCCTTTCAGCCTCTCTCCGAAAATCCCTTCCTCGGTCCTTCTGCTTCTACGTTAGCGATTGACAAAATGGGAGCTCTAAGGAAAAATATTTTACCTCAACAAACCTGGCGACTGTTCGCATTTCCATGTTTACATGCTGGAGCTATCCACCTTATCATCAATCTTTGCAGTGTTGTATTTGTAGGGATTCACTTAGAGCAGGAATTTGGGCAACTGAGGATCGCAATAATCTATCCCCTATCTGGTTTTGTTGGAACCTTGGTGGCTGCACTTTTTGTCCGAGACAGTCCGTCGGTTGGTTCCTCTGGAGCTCTATACGGATTAATTGGAGCTATGTTTTCTGGACTTATATGGAACTGGAAAGTTTACTCTCATAAGTGTGAAGCTCTAGTATCCCTCTTTTTGGTGTTATTCGTCAATTTTGGTCTTGGTCTCCTGCCTTATGTGGATAATTTTGCAAACATAGGAGGCTTAATATCAGGATTTCTTTTGGGGTTTATGCTTTTTTTCACTCTTCCAATAACGCAAGTGGCTAAAAGTAAAGCAGACCTTTTCAACGACAGTTTCAAAAACCATATGAAGCTAAAAATAAAGCAGAAACTTAACAGGCCTGTTCTCCGAAGTTTTTCACTTCTTCTATTTGGTCTCTTACTCGCTGGATGCCTCTTTGCAGTTCTTTGTGGCATTAACCTAAGCCAGTACTGCAAATGGTGTCAATACATTGATTGTATTCCTTCAAAAATATGGAACTGTGAAGGCAATTCATTCTCTTGTCAGACAATGGTTAGCAATGAGCAACTGACATTGACATGTTTGGGGAATGGGAATTTCAGAGTATTCCCCTTCAGCAACATTTCCCAAGAAAGGGTGCAGGATTTATGTAGCATGATATGCTCATAA 1188 42.85 IIFAKSMAESASDACNFHTQIVIKPPPLPFPADSLENLQEDRIPFFHSGSRRRRGDTWVISVFVILHILVFVATMFVNDCWRNSHQQCALKSLGRFSFQPLSENPFLGPSASTLAIDKMGALRKNILPQQTWRLFAFPCLHAGAIHLIINLCSVVFVGIHLEQEFGQLRIAIIYPLSGFVGTLVAALFVRDSPSVGSSGALYGLIGAMFSGLIWNWKVYSHKCEALVSLFLVLFVNFGLGLLPYVDNFANIGGLISGFLLGFMLFFTLPITQVAKSKADLFNDSFKNHMKLKIKQKLNRPVLRSFSLLLFGLLLAGCLFAVLCGINLSQYCKWCQYIDCIPSKIWNCEGNSFSCQTMVSNEQLTLTCLGNGNFRVFPFSNISQERVQDLCSMICS 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83862902 83865173 + Bma003516.1 Bma01g02631 77148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02631 395 Pfam Rhomboid family 127 265 IPR022764 GO:0004252|GO:0016021
Bma01g02631 395 PANTHER RHOMBOID-RELATED 17 394 IPR002610 GO:0004252|GO:0006508|GO:0016021
Bma01g02631 395 Gene3D - 52 266 IPR035952 -
Bma01g02631 395 SUPERFAMILY Rhomboid-like 55 266 IPR035952 -
Bma01g02631 395 PANTHER RHOMBOID-LIKE PROTEIN 8 17 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02631 - - - qlo:115972149 479.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02631 Bma-Chr1:83862902 Bma04g01392 Bma-Chr4:48406022 1.40E-80 dispersed
Bma01g02631 Bma-Chr1:83862902 Bma12g00098 Bma-Chr12:1648778 6.96E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g343 . . . . Bpe02g00087 . . Bma01g02631 Cmo05g00503 . . . . . . . . . . . . . . . Cla08g01086 Cam08g1538 Cec08g1112 Cco08g1239 Clacu08g1241 . Cre08g1022 . . . . . . . Cme03g01498 . . . . . . . . . . . . Cma05g00480 Car05g00428 . Cpe11g00420 . . . . . . . . . . . . . . . Lsi08g00943 . Chy03g01009 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012013 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 29