Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02640 ATGTCTGCAACAATGGCGAAGGGTGGAAACCAGAGAAAATCCACGAAGAAAGTGCAACAAAATCAAAATTCCCCACCGCAGAAGACAGAAAAACCACCACCTTGGTCGGTGGTAAGGGGCCTGTTGAGCTGTAGATATCTCCAACCTCATCAACAGCCTCTGCAAATGGCGATAAAAGAGCAGCAGAAGCTCAAACCAGATAAACCCGTCGAGGAAAACGTCAAGAAATGCAAGAAAATGAGATGGTCCAGTTCACTTTGTAGCAACACAAAGATAACGCAGAGACCTGATCAAACTGGGTTTCCTCAAGTCCATGAGAAAAGGACTTCCTTCAGCGTAGGAAAAGATGAATACTCTTCGAGCAGATCCATGAAAGCTCCTCTGCGTGAACTAAATGGGGTTGTGATCTCTACTTCTTATTTATCAGCGTCCTCAAACTCGTCCAATGGCGGCTCTTCTAGATCGGGGAAGTCTTTTCGGAAGTTCTACGGCTGTTATGAATGTAAGATGGTCGTTAATCCTGTTCTTGGAATCATCAGAGATCCTTCTCTCAGGGCTAGTATTTTTCCTTGCCCTGAATGCGGGGAAATCTTCATAAAATCCGAAAGTTTGGAGCTTCATCAATCTACTAGCCATGCAGTTTCCGAACTGGGTGCTGAGGATACAAGCAGGAACATAGTGGAAATCATATTCCAGTCGAGCTGGCTGAAGAAACAAGCTCCCATATGCAAAATCGACCGTATACTAAAAGTCCACAACACCCAAAAGACCATCTGCAGATTCGAAGAGTACAGAGACTCCATTAAAGCCAAATCAGCAAAGCTTCCAAAGAAGTACCCACGTTGCATAGCAGACGGCAATGAGCTACTCAGATTCCACTCAACCACCGTGGCCTGCGCACTCGGAGAAAACGGTTCATCAAATCTCTGCAACGCAATCACGCAGTGCAACGTCTGTAGTATCATAAAGAACGGTTTCAAAGTTTCCACCGGAGAACAGTCAGAAAAGGGAGTTCTGACGACGGCGACGAGTGGGAAAGCCCATGACAGTGCAGGAGATTGTCCGGACGGGGATGGGCGGAGGGCGATGCTGGTTTGCCGGGTGATTGCGGGGAGAGTAAGGAGGGGCTTGGAAATGAGTTCAGAAGAGTACGATTCAGTGGGGGGAGCAGTGGAAGTGTATTCCAATCTGGAAGAGTTGCGTGTATTCAATCCAAACGCTATTTTGCCTTGTTTTGTTGTCGTTTATGGAGGATTTTAG 1260 46.75 MSATMAKGGNQRKSTKKVQQNQNSPPQKTEKPPPWSVVRGLLSCRYLQPHQQPLQMAIKEQQKLKPDKPVEENVKKCKKMRWSSSLCSNTKITQRPDQTGFPQVHEKRTSFSVGKDEYSSSRSMKAPLRELNGVVISTSYLSASSNSSNGGSSRSGKSFRKFYGCYECKMVVNPVLGIIRDPSLRASIFPCPECGEIFIKSESLELHQSTSHAVSELGAEDTSRNIVEIIFQSSWLKKQAPICKIDRILKVHNTQKTICRFEEYRDSIKAKSAKLPKKYPRCIADGNELLRFHSTTVACALGENGSSNLCNAITQCNVCSIIKNGFKVSTGEQSEKGVLTTATSGKAHDSAGDCPDGDGRRAMLVCRVIAGRVRRGLEMSSEEYDSVGGAVEVYSNLEELRVFNPNAILPCFVVVYGGF 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83911540 83912868 + Bma003525.1 Bma01g02640 77157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02640 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 217 IPR013087 -
Bma01g02640 419 MobiDBLite consensus disorder prediction 1 36 - -
Bma01g02640 419 Gene3D - 213 417 - -
Bma01g02640 419 MobiDBLite consensus disorder prediction 1 26 - -
Bma01g02640 419 SUPERFAMILY ADP-ribosylation 214 417 - -
Bma01g02640 419 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 416 - -
Bma01g02640 419 ProSitePatterns Zinc finger C2H2 type domain signature. 191 212 IPR013087 -
Bma01g02640 419 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 416 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02640 Bma01g00833 CCT
Bma01g02640 Bma02g00231 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02640 Bma-Chr1:83911540 Bma02g00231 Bma-Chr2:2421948 9.89E-135 dispersed
Bma14g00038 Bma-Chr14:500946 Bma01g02640 Bma-Chr1:83911540 1.02E-35 transposed
Bma01g00833 Bma-Chr1:7839060 Bma01g02640 Bma-Chr1:83911540 1.26E-141 wgd
Bma01g02640 Bma-Chr1:83911540 Bma02g00228 Bma-Chr2:2396807 1.47E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56824 None None None None Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02640 - - zju:107421015 559.681