Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02641 ATGGGTTTAGAGAGAGTGCAAGATGTTGCAACCGCAGCCACATTTACCATCCCGGAGGAGTTCATCAGGTCAGAAACGGAGCAACCAGGAATCACGACAGTTCACGGCGAAACCCTGGCGGTTCCTGTGATTGATTTCAGCAACCCAGATGAGGAAAAGGTCATTCGTGCCATTGAGGACGCGAGTCTGAAGTGGGGCATGTTTCAAATCGTCAACCATGAAATTCCCAGCGAGGCCATAGCCAGATTGCAGAGCGTTGGCAAAGAGTTTTTCGAGCTTCCCTCGGAGGAAAAGGAGTCTTGCGCTAAGATACCTGGCTCTGACTCAATCGAAGGATATGGAACCAAGCTTCAGAAGGAAGAAGAAGGAAAGAAAGGTTGGGTCGACCATTTGTTCCACCGGATATGGCCTCCTTCCGCCATTAATTATCAGTTCTGGCCTAAGAACCCTCCTGCTTACAGGGAAGCGAATGAGGAGTACGTGAAATACTTGCATTGCGTGGTAGAAAAGCTGTTCAAGAGCCTTTCCCTAGGGCTAGGTCTAGAAGGGCAGGAGCTGAAGGAGGCGGCAGGTGGAGATGATCTGGTTTACATGATGAAGATAAATTACTATCCGCCATGCCCACGCCCAGATCTTGCTCTGGGCGTGGTAGCTCACACAGACATGTGCACCATCACCATTCTCGTCCCGAACGATGTCGAGGGCCTCCAAGCTTTCAGAGATGGCCACTGGTACGACGTAAAATACGTCCCCAATGCTCTCGTAATTCACATCGGCGACCAAGTTGAGATATTGAGCAATGGGAAGTACAAGAGTGTTCTTCACCGTACGACAGTGAACAAAGACAGAACCAGAATGTCGTGGCCAGTCTTCTTGGAGCCACCTGCAGATCTGATGGTCGGACCACACCCTAAGATTGTGAGCGATGAAAACCCACCAAAATTCAAGACCAAGAAATACAGGGACTACGTTTACTGCAAACTCAACAAGATCCATCAGTAG 1002 49.6 MGLERVQDVATAATFTIPEEFIRSETEQPGITTVHGETLAVPVIDFSNPDEEKVIRAIEDASLKWGMFQIVNHEIPSEAIARLQSVGKEFFELPSEEKESCAKIPGSDSIEGYGTKLQKEEEGKKGWVDHLFHRIWPPSAINYQFWPKNPPAYREANEEYVKYLHCVVEKLFKSLSLGLGLEGQELKEAAGGDDLVYMMKINYYPPCPRPDLALGVVAHTDMCTITILVPNDVEGLQAFRDGHWYDVKYVPNALVIHIGDQVEILSNGKYKSVLHRTTVNKDRTRMSWPVFLEPPADLMVGPHPKIVSDENPPKFKTKKYRDYVYCKLNKIHQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 83915758 83916946 - Bma003526.1 Bma01g02641 77158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02641 333 Pfam 2OG-Fe(II) oxygenase superfamily 198 294 IPR044861 -
Bma01g02641 333 PANTHER OS02G0767300 PROTEIN 13 330 - -
Bma01g02641 333 Pfam non-haem dioxygenase in morphine synthesis N-terminal 41 148 IPR026992 -
Bma01g02641 333 SUPERFAMILY Clavaminate synthase-like 4 332 - -
Bma01g02641 333 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 13 330 - -
Bma01g02641 333 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 194 294 IPR005123 -
Bma01g02641 333 Gene3D - 1 332 IPR027443 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02641 K05278 FLS; flavonol synthase [EC:1.14.20.6] - qsu:112004171 531.561
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02641 Bma-Chr1:83915758 Bma12g00110 Bma-Chr12:1728904 1.04E-92 dispersed
Bma01g00830 Bma-Chr1:7815478 Bma01g02641 Bma-Chr1:83915758 0 wgd
Bma01g02641 Bma-Chr1:83915758 Bma05g01385 Bma-Chr5:53271594 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g306 . Blo12g00679 . . Bpe02g00077 . . Bma01g02641 . Cmo15g00711 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0457 . . . . . . . . . . . . . . . . . . Car15g00641 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003902 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 2 43