Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02668 ATGTTGTGGGTTGACAAGTACCGTCCCAAAACCCTAGACCAGATCGTTGTCCACCAAGACGTCGCTCAGAACCTCAAGAAATTGGTTACGGAGCAGGACTGCCCACATTTACTCTTCTATGGACCTCCCGGCTCAGGAAAGAAAACCCTAATCATGGCCTTAATTCGACAGATGTTCGGGCCTAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACATGGAAAGTGGATGCTGGAAGTCGAAGTATTGATATAGAGTTGACAACATTATCTAGTGCAAACCATGTGGAATTAAATCCCAGTGATGCAGGTTTTCAAGACAGATACATTGTTCAAGAGATAATAAAGGAAATGGCAAAGAATAGACCAATTGACACAAAGGGAAGAAAAGGATATAAAGTGTTAGTTCTCAATGAAGTTGACAAACTCTCAAGAGAAGCGCAGCATTCTCTACGCAGAACAATGGAGAAGTATAGTTCTTATTGCAGGTTAATACTTTGCTGTAATAGTTCGTCAAGAGTTACAGAAGCCATTAGGTCTCGATGTCTTAATGTTCGGATTAATTCACCGACAGAAGATCAGATTGTTAAGGTGTTAGAGTTTGTGGGGAAGAAAGAAGGACTGCAGATTCCATCTGGATTTGCTGCTCGTATTGCTGAAAAATCAAATCGAAGTTTAAGGAGGGCTATATTGTCTTTAGAGACTTGTCGCGTGCAACAGTATCCTTTTAGTAGCAGTCAAGTCATACCACCAATGGATTGGGAGGAATATGTGGCCGAGATATCATCTGACATAATGAAGGAGCAGAGCCCTAAGAGATTGTTTGAGGTTCGAGGAAAGTTGTATGAGCTTCTCGGGAACTGTATTCCTGCAGAGATTATCTTAAAGAGATTACTATACGAACTACTCAAAAAATTGGATGCCGAATTAAAGCATGAGATCTGCCATTGGGCTGCATATTATGAACATAGGATGCGCCTTGGACAAAAAGCCATCTTTCACCTTGAAGCATTTGTGGCCAAATTCATGAGTATATACAAGACGTTCCTCATATCGACATTTGGG 1062 41.43 MLWVDKYRPKTLDQIVVHQDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALIRQMFGPSAEKVKVENKTWKVDAGSRSIDIELTTLSSANHVELNPSDAGFQDRYIVQEIIKEMAKNRPIDTKGRKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINSPTEDQIVKVLEFVGKKEGLQIPSGFAARIAEKSNRSLRRAILSLETCRVQQYPFSSSQVIPPMDWEEYVAEISSDIMKEQSPKRLFEVRGKLYELLGNCIPAEIILKRLLYELLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKTFLISTFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84176956 84193154 + Bma030313 Bma01g02668 77185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02668 354 PANTHER REPLICATION FACTOR C SUBUNIT 3 2 346 - -
Bma01g02668 354 CDD AAA 16 181 - -
Bma01g02668 354 Gene3D - 252 345 - -
Bma01g02668 354 Gene3D - 190 250 - -
Bma01g02668 354 SMART AAA_5 33 192 IPR003593 -
Bma01g02668 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 241 IPR027417 -
Bma01g02668 354 Pfam DNA polymerase III, delta subunit 18 188 - -
Bma01g02668 354 Gene3D - 1 189 IPR027417 -
Bma01g02668 354 SUPERFAMILY post-AAA+ oligomerization domain-like 251 346 IPR008921 GO:0003677|GO:0006260
Bma01g02668 354 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 2 346 - -
Bma01g02668 354 CDD HLD_clamp_RFC 189 257 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g02668 Bma04g00016 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02668 Bma-Chr1:84176956 Bma04g00016 Bma-Chr4:217900 1.55E-35 dispersed
Bma01g01795 Bma-Chr1:62670901 Bma01g02668 Bma-Chr1:84176956 0 transposed
Bma06g01245 Bma-Chr6:49607656 Bma01g02668 Bma-Chr1:84176956 1.60E-51 transposed
Bma07g00220 Bma-Chr7:2616295 Bma01g02668 Bma-Chr1:84176956 6.49E-08 transposed
Bma01g00807 Bma-Chr1:7547519 Bma01g02668 Bma-Chr1:84176956 2.85E-13 wgd
Bma01g02668 Bma-Chr1:84176956 Bma02g00213 Bma-Chr2:2279343 2.31E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02668 K10756 - jre:109000861 637.876