Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma01g02668 | ATGTTGTGGGTTGACAAGTACCGTCCCAAAACCCTAGACCAGATCGTTGTCCACCAAGACGTCGCTCAGAACCTCAAGAAATTGGTTACGGAGCAGGACTGCCCACATTTACTCTTCTATGGACCTCCCGGCTCAGGAAAGAAAACCCTAATCATGGCCTTAATTCGACAGATGTTCGGGCCTAGTGCGGAGAAGGTGAAGGTGGAGAATAAAACATGGAAAGTGGATGCTGGAAGTCGAAGTATTGATATAGAGTTGACAACATTATCTAGTGCAAACCATGTGGAATTAAATCCCAGTGATGCAGGTTTTCAAGACAGATACATTGTTCAAGAGATAATAAAGGAAATGGCAAAGAATAGACCAATTGACACAAAGGGAAGAAAAGGATATAAAGTGTTAGTTCTCAATGAAGTTGACAAACTCTCAAGAGAAGCGCAGCATTCTCTACGCAGAACAATGGAGAAGTATAGTTCTTATTGCAGGTTAATACTTTGCTGTAATAGTTCGTCAAGAGTTACAGAAGCCATTAGGTCTCGATGTCTTAATGTTCGGATTAATTCACCGACAGAAGATCAGATTGTTAAGGTGTTAGAGTTTGTGGGGAAGAAAGAAGGACTGCAGATTCCATCTGGATTTGCTGCTCGTATTGCTGAAAAATCAAATCGAAGTTTAAGGAGGGCTATATTGTCTTTAGAGACTTGTCGCGTGCAACAGTATCCTTTTAGTAGCAGTCAAGTCATACCACCAATGGATTGGGAGGAATATGTGGCCGAGATATCATCTGACATAATGAAGGAGCAGAGCCCTAAGAGATTGTTTGAGGTTCGAGGAAAGTTGTATGAGCTTCTCGGGAACTGTATTCCTGCAGAGATTATCTTAAAGAGATTACTATACGAACTACTCAAAAAATTGGATGCCGAATTAAAGCATGAGATCTGCCATTGGGCTGCATATTATGAACATAGGATGCGCCTTGGACAAAAAGCCATCTTTCACCTTGAAGCATTTGTGGCCAAATTCATGAGTATATACAAGACGTTCCTCATATCGACATTTGGG | 1062 | 41.43 | MLWVDKYRPKTLDQIVVHQDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMALIRQMFGPSAEKVKVENKTWKVDAGSRSIDIELTTLSSANHVELNPSDAGFQDRYIVQEIIKEMAKNRPIDTKGRKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSYCRLILCCNSSSRVTEAIRSRCLNVRINSPTEDQIVKVLEFVGKKEGLQIPSGFAARIAEKSNRSLRRAILSLETCRVQQYPFSSSQVIPPMDWEEYVAEISSDIMKEQSPKRLFEVRGKLYELLGNCIPAEIILKRLLYELLKKLDAELKHEICHWAAYYEHRMRLGQKAIFHLEAFVAKFMSIYKTFLISTFG | 354 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 84176956 | 84193154 | + | Bma030313 | Bma01g02668 | 77185 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma01g02668 | 354 | PANTHER | REPLICATION FACTOR C SUBUNIT 3 | 2 | 346 | - | - | |
Bma01g02668 | 354 | CDD | AAA | 16 | 181 | - | - | |
Bma01g02668 | 354 | Gene3D | - | 252 | 345 | - | - | |
Bma01g02668 | 354 | Gene3D | - | 190 | 250 | - | - | |
Bma01g02668 | 354 | SMART | AAA_5 | 33 | 192 | IPR003593 | - | |
Bma01g02668 | 354 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 241 | IPR027417 | - | |
Bma01g02668 | 354 | Pfam | DNA polymerase III, delta subunit | 18 | 188 | - | - | |
Bma01g02668 | 354 | Gene3D | - | 1 | 189 | IPR027417 | - | |
Bma01g02668 | 354 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 251 | 346 | IPR008921 | GO:0003677|GO:0006260 | |
Bma01g02668 | 354 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 2 | 346 | - | - | |
Bma01g02668 | 354 | CDD | HLD_clamp_RFC | 189 | 257 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma01g02668 | Bma04g00016 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02668 | Bma-Chr1:84176956 | Bma04g00016 | Bma-Chr4:217900 | 1.55E-35 | dispersed | |
Bma01g01795 | Bma-Chr1:62670901 | Bma01g02668 | Bma-Chr1:84176956 | 0 | transposed | |
Bma06g01245 | Bma-Chr6:49607656 | Bma01g02668 | Bma-Chr1:84176956 | 1.60E-51 | transposed | |
Bma07g00220 | Bma-Chr7:2616295 | Bma01g02668 | Bma-Chr1:84176956 | 6.49E-08 | transposed | |
Bma01g00807 | Bma-Chr1:7547519 | Bma01g02668 | Bma-Chr1:84176956 | 2.85E-13 | wgd | |
Bma01g02668 | Bma-Chr1:84176956 | Bma02g00213 | Bma-Chr2:2279343 | 2.31E-29 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma01g02668 | K10756 | - | jre:109000861 | 637.876 |