Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02700 ATGAGGGAGGACGACTCTAATTGGTTCTCTAGGTGGGAGGAGGAGCTCCCATCTCCTGACGAATTAATGCCTTTATCCCAAACCCTAATCACCCCTGATCTCGCTCTCGCTTTTGAAATCCGAAGTCCATCCAATACTTGCCCCCAGCAAGGCCCGCCGCCTCCGACTCTTTCCAATCACTTAGCTTCCTCAGCTGCTGCTGGCTGCGGTGGAGCCGCTACTCAACCCAACTCCTCCGAGTTTGCAGATTCCGCCGATTTGGGTTCTGGAGCTGCTGGCGATGAACCGGCAAGGACCCTCAAGCGGCCGCGGCTTGTTTGGACGCCCCAGCTCCACAAGCGGTTCGTAGATGCGGTGGCGCATTTGGGGATCAAGAATGCTGTCCCAAAGACTATAATGCAGCTGATGAGTGTGGATGGGTTGACTAGAGAGAACGTGGCTAGCCATTTACAGAAGTACCGCCTTTATTTGAAAAGAATGCAGGGATTATCAAGCGGGAGCGGTGGAGGAGCTGCCGTAGGAGTGGCCGGAGGAGTTGATCCTGCTACCGATCATTTGTTTGCCAGCTCTCCAGTTCCGCCGCATTTCTTGCACCCACACCCAGGCCGCCCCAGTTCCGACCATTTCTTGCCTTTTGTACCAGTTGCAGCTTTGCAGCAGCACCACCATCACCACCAGCAGATTGCGGCAGCAGCTGCCCATCCTCAGCTGCAGCCTCAGTATCACAGACAGGTCGGCCATTTTGGGTCACCTCCGAATGGGCAATACGAGCATCCGTTTTTAGCGAGGCAGACTCAGCCAGTTCACAGGGTGGGTGCACCATTGCACAATTCGATGCTGAATCACATCGAGGACTTGGAATCTGCTAACGCCACTGGAGGGAGGAAGGTTCTTACTCTGTTTCCAACTGGGGATGACTAA 921 54.72 MREDDSNWFSRWEEELPSPDELMPLSQTLITPDLALAFEIRSPSNTCPQQGPPPPTLSNHLASSAAAGCGGAATQPNSSEFADSADLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSGSGGGAAVGVAGGVDPATDHLFASSPVPPHFLHPHPGRPSSDHFLPFVPVAALQQHHHHHQQIAAAAAHPQLQPQYHRQVGHFGSPPNGQYEHPFLARQTQPVHRVGAPLHNSMLNHIEDLESANATGGRKVLTLFPTGDD 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84437522 84438442 - Bma003583.1 Bma01g02700 77217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02700 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 306 IPR044841 GO:0003700|GO:0006355
Bma01g02700 306 Pfam Myb-like DNA-binding domain 106 154 IPR001005 -
Bma01g02700 306 Gene3D - 99 161 - -
Bma01g02700 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 158 IPR017930 -
Bma01g02700 306 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 306 - -
Bma01g02700 306 MobiDBLite consensus disorder prediction 43 96 - -
Bma01g02700 306 SUPERFAMILY Homeodomain-like 99 159 IPR009057 -
Bma01g02700 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 155 IPR006447 GO:0003677
Bma01g02700 306 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02700 Bma-Chr1:84437522 Bma07g00088 Bma-Chr7:1669228 1.23E-44 dispersed
Bma01g02700 Bma-Chr1:84437522 Bma05g01331 Bma-Chr5:52866826 4.19E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56828 PF00249 Myb_DNA-binding 2.30E-08 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02700 - - csv:101216969 431.409