Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02720 ATGGTTTTCTCAATGTCCTTGGCTTTTCAGTTTTTCTTTCTCTTTCTTCACCTTCTTCCTCTTTGTTTCTCTCTCAACTCCGACGGTCTCGCTCTTCTCGCCCTCAAAGCCGCCATTGACACCGACCCAACTCGCCTTCTTGACTCCTGGTCTGACTCCGACTTCACTCCTTGTCGCTGGGATGGAGTCGTTTGCACTCGAGACCGAGTTACCGAGCTCACTCTCTCCCGAAGGGGCTTCAATGGTTACATTCCCTCCGAACTCGGTTTGCTCGACTCCCTCACCTCACTCACTTTGGCTAACAACAATTTCTCCAGTCTAATTCCCTCGCATTTATACAATACCACTAATCTAGTCTCTCTCGATCTCTCTCATAACTCGCTTTCTGGCCCAATCTCCGACCAAATCAAAGACCTCAAAAGCCTCAAGCATGTGGATTTATCATCCAATTTACTCAACGGCTCTCTCCCAGAGGGCCTCGGGGAGCTCCCTCATCTCGTCGGAACTCTTAATTTGTCGTACAATCGTTTCTCAGGCGGAGTTCCCGCTTCCTTCGGAAATCTTCCGGTGCTCGTGAATCTCGATCTCCGATACAACAATCTCACTGGGAAACTTCCTCAGGTTGGATCGCTGTTAAACCAAGGACCTACTTCGTTCTCCGGAAACCCCAGCCTTTGTGGATTTCCTCTGCAAACTCCATGTCCAGAGGCTCAAAATCCTAGGGGTTTTCCGAGCTCTGAACAGCCACAAAATCCGAAAGAGAACAACCCTGCCTTTCCCGCCTTCGATGTCGACAGATCAAAAGAAAAACGAGAGGGATCGCTGACCGTGTCTGTAATCTCCAGCGTTTCAGTCATTCTCGGAATTGTTTCCGTCTCGGTCTGGTGGTTTCGGAGAAAAGGGAGGAGTGTCGCCGGGGAGGATGGTAAAATGGGAAAAAAGGAAGCAGAGAGCGAGGTTGAAGAAGAAGGGCAAAAAGGTAAATTCGTAATAGTAGATGAGGGGTTTAATTTGGAATTCGAAGATTTGTTGAGGGCGTCTGCGTACGTAATTGGTAAAAGCAGGAGTGGAATAGTTTACAAGGTGGTGGCCGGTCGAGGATCAGGTGCGCCGGCGACCGTCGTAGCCGTGAGGAGATTGAGCGAGGGAGGTTCGACGTGGAGGTTCAAGGAGTTTGAAAGTGAAGTGGAGGCCATTGGGAGGGTCCAACACCCTAATATAGTCCGTCTTAGAGCTTACTATTATGCAAATGATGAGAAATTATTGGTCACTGATTTCATCAGGAACGGTAGCTTGCACACAGCTCTGCGTGGAGACCCTTCTAATCCTTTGCCACCATTGACTTGGGCCACTCGGTTGAAAATTGCGCAAGGAGCTGCCAGAGGTTTGGCGTATATCCACGATTTGAGTCCTCGAAAGTACACTCATGGAAACATAAAATCCACAAAAATCCTCCTTGACGACGACCTCCAATCTTATATTTCTGGATCTGGACTCAATCGGCTCACCTCTGCGGCCTCAAGATTCACAACCCCGCCGTCTAAAAAACAGAATTCGAACCGAACCATTATAAACCCTGCCATCAATTCGACCATTTCGAGTCCTTCAAAGTACTTGGCTCCTGAAATCTTGGTTCCTGGTGGGAAATATACACAGAAATGTGATGTTTACTCCTTTGGTATTGTTCTTATGGAGATTTTGACTGGTCAGTTGCCAGAAGCATCGCCGGAAAATGATGGCAAGGGGCTTGAGAGGTTTGTGAGGAAAGCATCTAGTGACGAAGGCTCATTCTCGGAGATCATGGATCCGACGCTTGCTCGTGAAGTTGAGGCCAAGAAACAGGTAATTGCTACATTTCACATTGCACTCAATTGCACGGAAACAGATCCGGAGGTGAGGCCGAGGATGAGGACGGTGTCAGAGAGTCTTGATCGCATCAAAATGGAGTAA 1950 48.36 MVFSMSLAFQFFFLFLHLLPLCFSLNSDGLALLALKAAIDTDPTRLLDSWSDSDFTPCRWDGVVCTRDRVTELTLSRRGFNGYIPSELGLLDSLTSLTLANNNFSSLIPSHLYNTTNLVSLDLSHNSLSGPISDQIKDLKSLKHVDLSSNLLNGSLPEGLGELPHLVGTLNLSYNRFSGGVPASFGNLPVLVNLDLRYNNLTGKLPQVGSLLNQGPTSFSGNPSLCGFPLQTPCPEAQNPRGFPSSEQPQNPKENNPAFPAFDVDRSKEKREGSLTVSVISSVSVILGIVSVSVWWFRRKGRSVAGEDGKMGKKEAESEVEEEGQKGKFVIVDEGFNLEFEDLLRASAYVIGKSRSGIVYKVVAGRGSGAPATVVAVRRLSEGGSTWRFKEFESEVEAIGRVQHPNIVRLRAYYYANDEKLLVTDFIRNGSLHTALRGDPSNPLPPLTWATRLKIAQGAARGLAYIHDLSPRKYTHGNIKSTKILLDDDLQSYISGSGLNRLTSAASRFTTPPSKKQNSNRTIINPAINSTISSPSKYLAPEILVPGGKYTQKCDVYSFGIVLMEILTGQLPEASPENDGKGLERFVRKASSDEGSFSEIMDPTLAREVEAKKQVIATFHIALNCTETDPEVRPRMRTVSESLDRIKME 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84541492 84544293 + Bma003601.1 Bma01g02720 77237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02720 649 MobiDBLite consensus disorder prediction 230 264 - -
Bma01g02720 649 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Bma01g02720 649 Pfam Protein tyrosine and serine/threonine kinase 350 643 IPR001245 GO:0004672|GO:0006468
Bma01g02720 649 Pfam Leucine rich repeat 93 152 IPR001611 GO:0005515
Bma01g02720 649 Gene3D Transferase(Phosphotransferase) domain 1 427 649 - -
Bma01g02720 649 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 5 648 - -
Bma01g02720 649 ProSiteProfiles Protein kinase domain profile. 345 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma01g02720 649 Gene3D Phosphorylase Kinase; domain 1 312 426 - -
Bma01g02720 649 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 5 648 - -
Bma01g02720 649 Gene3D Ribonuclease Inhibitor 25 167 IPR032675 -
Bma01g02720 649 Gene3D Ribonuclease Inhibitor 168 236 IPR032675 -
Bma01g02720 649 SUPERFAMILY Protein kinase-like (PK-like) 350 645 IPR011009 -
Bma01g02720 649 SUPERFAMILY L domain-like 23 231 - -
Bma01g02720 649 MobiDBLite consensus disorder prediction 238 255 - -
Bma01g02720 649 PRINTS Leucine-rich repeat signature 139 152 - -
Bma01g02720 649 PRINTS Leucine-rich repeat signature 118 131 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02720 Bma-Chr1:84541492 Bma15g00237 Bma-Chr15:2369232 8.60E-173 dispersed
Bma01g02720 Bma-Chr1:84541492 Bma14g01908 Bma-Chr14:40794714 2.94E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66318 PF07714 PK_Tyr_Ser-Thr 1.40E-28 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02720 - - zju:107432411 831.247