Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02723 ATGGCTGACCCTTACTCCAATTTCCTTACTGGTCTCTTCAGGCTCAATACAGTCCACCATAACCAACCTTCTCCTTTTCCAAACCCTCCGCCGCCACCTCTTTTCTCCCAACCCTTTTTCCACCACCAAACTCCGCCGCCTTCTCCGCCTCTCAGGCAGGCCCTCCCCCTCCTCAGCCTCACCCCACTCAACCAACAACAACAAGAAGATCAATTTCACCACTCTTCCTCTACCGCCATGGAAGTGGATCAGAAAAGCTTCAAACAGAAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGACGATGACGTGGCTTCTGTAACCGTTGCCCTTCATATAGGTTTACCTAGCCCTAGTTCAGCTGAGCTTGCTTCTATTCTCTCTGCTTCTTCATCTGAAATCACTGATCTTAAAGATCATGGAGACGGAGATGATTTAGGGTACCCTATAAACAGGCTAAACAAGGGTCAGTATTGGATCCCTACTCCATCTCAGATTCTTATCGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTATAAGACCTTCAACAGATATAATAACATGCAGATGCATATGTGGGGACATGGATCTCAATATAGAAGAGGGCCAGAATCACTGAGAGGCACTCAACCAACAGGAATGCTAAGGCTTCCTTGCTACTGCTGTGCAACGGGATGCAGAAACAACATAGACCATCCGAGGGCTAAACCACTGAAAGATTTTAGAACCCTCCAAACACATTACAAAAGAAAGCACGGAATCAAACCTTTTATGTGTAGAAAATGTGGGAAAGCCTTTGCAGTGAAAGGAGACTGGAGAACTCATGAGAAAAACTGTGGGAAACTTTGGTATTGTATCTGCGGGTCTGATTTTAAGCACAAGAGGTCTCTTAAAGATCATATAAAAGCTTTTGGCAAAGAGCATGCAGCTTATGGAATCGATGGGTTTGAAGAAGATGATGAACCGGCCTCTGAGGTTGAACAAGATAATGAATCTTTGCAGTAG 1005 45.07 MADPYSNFLTGLFRLNTVHHNQPSPFPNPPPPPLFSQPFFHHQTPPPSPPLRQALPLLSLTPLNQQQQEDQFHHSSSTAMEVDQKSFKQKEEEEEEEEEEDDDVASVTVALHIGLPSPSSAELASILSASSSEITDLKDHGDGDDLGYPINRLNKGQYWIPTPSQILIGPTQFSCPVCYKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCATGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVKGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGKEHAAYGIDGFEEDDEPASEVEQDNESLQ 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84574183 84576294 - Bma003604.1 Bma01g02723 77240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02723 334 SUPERFAMILY beta-beta-alpha zinc fingers 239 277 IPR036236 -
Bma01g02723 334 MobiDBLite consensus disorder prediction 23 53 - -
Bma01g02723 334 MobiDBLite consensus disorder prediction 66 83 - -
Bma01g02723 334 SMART c2h2final6 173 195 IPR013087 -
Bma01g02723 334 SMART c2h2final6 257 277 IPR013087 -
Bma01g02723 334 Gene3D Classic Zinc Finger 235 312 - -
Bma01g02723 334 Coils Coil 80 100 - -
Bma01g02723 334 SUPERFAMILY beta-beta-alpha zinc fingers 169 195 IPR036236 -
Bma01g02723 334 Gene3D Classic Zinc Finger 172 195 - -
Bma01g02723 334 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Bma01g02723 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Bma01g02723 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 277 IPR013087 -
Bma01g02723 334 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 334 - -
Bma01g02723 334 MobiDBLite consensus disorder prediction 66 104 - -
Bma01g02723 334 PANTHER ZINC FINGER PROTEIN WIP2 1 334 IPR043584 GO:0003700|GO:0010468
Bma01g02723 334 MobiDBLite consensus disorder prediction 18 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02723 Bma-Chr1:84574183 Bma09g00850 Bma-Chr9:47527530 2.56E-130 dispersed
Bma06g00769 Bma-Chr6:39469829 Bma01g02723 Bma-Chr1:84574183 3.88E-102 transposed
Bma07g00193 Bma-Chr7:2421379 Bma01g02723 Bma-Chr1:84574183 2.36E-77 transposed
Bma01g02723 Bma-Chr1:84574183 Bma04g00457 Bma-Chr4:3823478 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56835 None None None None Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02723 - - jre:108986074 481.1