Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma01g02725 ATGAATCACTTGACTATCGAGACCGAAGATGCATTTTCCAGTTTGCTTGAACATGCGGCTAATAATGACATTGAAGGCTTCAAAAAATCAATTGATCTTGATGTTTCTGCAGTTGATGAGATTGGTCACTGGTATGGTCGCCAAAAGAGGTCAAAGCAGATGGTTTATGATTATAGAACGCCTCTAATGGTTGCTGCTACTTATGGAAGCATTGATGTCATAAAGTTGATTCTTTCTTTATCTCATGCTGATATAAATCGATCTGCTGGTTATGACAAAAGCACTGTTCTTCACTGTGCGGCCTCAGGTGGGGCTGCAAATGCACCTGATGTTGTGAAACTGCTTTTGGCTGCTGGCAGTGATCCAAATTTGGTCGATGCTAATGGTCATCGTCCTCTTGATGTTATTGATGTTATCCCAAAACTTCAGAATGTCAAAAAGGCCCTTGAAGAACTCCTTTTATCCAATGTTTCTTCTGCCAGTTCATGCAATCTTATAATCTCAACTTGTCACTTAACTTCTAATTCTCCTTCTCTTCCATCTTCTCCTGTACAAGGGTTGCTGCCTACTTCTGAGTTTGTTTCTTCACCAACAAAGTCTAAATTCTCCGATTTCTCAGCGTCGTCAGTGATAGACAGAAAGGAATACCCTGTTGATCCATCTCTCCCAGACATCAAAAATAGCATTTATTCCACTGATGATTTTAGAATGTACTCATTCAAGGTCCGGCCTTGTTCACGTGCATATTCTCATGATTGGACCGAGTGCCCTTTTGTCCATCCAGGAGAGAATGCTCGAAGAAGGGATCCAAGGAAGTTCCATTATAGTTGTGTTCCATGTCCTGAATTTCGAAAGGGCGCCTGTAGACGTGGAGATATGTGTGAATATGCACATGGGGTTTTTGAATGCTGGCTTCACCCAGCACAGTACAGAACCCGTCTTTGTAAGGATGGAACAAATTGTGGTAGGAGAGTTTGTTTTTTTGCACATACTGCTGAAGAACTTCGTCCGTTATATGTTTCTACTGGGTCTGCTGTTCCATCTCCTCGTTCAGGAAGTCTTGGAGCTGTTGATTATGCTGCAGCGATGAACCTCTTACCTGGTTCTCCATCTTCAAAGTCTGTCACTTCTCCTTCACCATTTACTCCTCCCATGTCTCCGTCTGCCAATAGCATGCAACACTCATCTGTAAATTGGCCCCAACAAAATGTCCCTGCTTTGCATCTCTCTGTGGGAAATCTTCAGTCCAGTCGCTTGAGATCGTCCCTGAATGCAAGAGATATTCCAGTCGATGACTTTGATTTGCTTCAAGATTTTGATATGCAGCACCAACAGCTCCTGAATGATTACTGTGGTGTTTCTCTATTGTCTGCAATTTCTATGTCCGCCAATCACTCTGGAAGGCTGAAAACTCTGACCCCATCAAACTTGGATGACCTCTTCACTACGGAAAGTTCATCTCCTCGGCACTCAGATCAGGCATTAGCTTCAACTGTTTTTTCTCCAACACATAAATCAGCTGTACTTAATCAATTTCAGCAGCAGCAGAGTATGCTGTCTCCTATCAACACAAACTTTTCTCCAAAAAGTGTGGATCATCATCTATTGCATGCCTCTTTTGGGATTTCATCGTCAGAGAGGATGTCTCCACCGAATGCAGAACCTGTCTCACCAATCAGCTCATGTTTATCCATGTTAGCTCAACGAGAGAATCCGCGACAATTTCGTAGCCTTAGCTCAAGGGAGCTCGGTTCTAGTGTCGCTTGTGTTGGTTCCCCATTGAACTCGTGGTCTACGGTTGAATCGCCCAATGATAATGTTGATTGGGTAACTAATACTGGTTTTATGGGTAAGCTTCGCAGATCATCCTCATATGAGCTCGTGGACAATGGAGAAGAGCCAGATTTTTCATGGGTTCAGTCACTTGTTAAAGACTCTCCTAGTGAGATGAAAGAAAAAGTAGCTCCAATTGACTCAGGTAGCATGAGGGTTGCGCCGTCTGAGGAGTGTCCAAATGATAACTTAAGCGGCTCCGTCGATCATGCTTTGTTGGCAGCATGGCTAGAGCAAATGCAGCTTGATCATCTCGTGGCTCAGCAAAATTGA 2106 43.45 MNHLTIETEDAFSSLLEHAANNDIEGFKKSIDLDVSAVDEIGHWYGRQKRSKQMVYDYRTPLMVAATYGSIDVIKLILSLSHADINRSAGYDKSTVLHCAASGGAANAPDVVKLLLAAGSDPNLVDANGHRPLDVIDVIPKLQNVKKALEELLLSNVSSASSCNLIISTCHLTSNSPSLPSSPVQGLLPTSEFVSSPTKSKFSDFSASSVIDRKEYPVDPSLPDIKNSIYSTDDFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCGRRVCFFAHTAEELRPLYVSTGSAVPSPRSGSLGAVDYAAAMNLLPGSPSSKSVTSPSPFTPPMSPSANSMQHSSVNWPQQNVPALHLSVGNLQSSRLRSSLNARDIPVDDFDLLQDFDMQHQQLLNDYCGVSLLSAISMSANHSGRLKTLTPSNLDDLFTTESSSPRHSDQALASTVFSPTHKSAVLNQFQQQQSMLSPINTNFSPKSVDHHLLHASFGISSSERMSPPNAEPVSPISSCLSMLAQRENPRQFRSLSSRELGSSVACVGSPLNSWSTVESPNDNVDWVTNTGFMGKLRRSSSYELVDNGEEPDFSWVQSLVKDSPSEMKEKVAPIDSGSMRVAPSEECPNDNLSGSVDHALLAAWLEQMQLDHLVAQQN 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 84626372 84628477 - Bma003607.1 Bma01g02725 77242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma01g02725 701 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Bma01g02725 701 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Bma01g02725 701 Pfam CCCH-type zinc finger 279 299 IPR041367 -
Bma01g02725 701 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Bma01g02725 701 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 698 - -
Bma01g02725 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bma01g02725 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bma01g02725 701 PANTHER UNKEMPT FAMILY MEMBER 1 698 IPR045234 -
Bma01g02725 701 SUPERFAMILY Ankyrin repeat 15 135 IPR036770 -
Bma01g02725 701 Gene3D - 276 337 - -
Bma01g02725 701 Gene3D - 4 162 IPR036770 -
Bma01g02725 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bma01g02725 701 MobiDBLite consensus disorder prediction 369 396 - -
Bma01g02725 701 Pfam Ankyrin repeats (3 copies) 57 126 IPR002110 GO:0005515
Bma01g02725 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02725 Bma-Chr1:84626372 Bma13g00133 Bma-Chr13:1338580 0 dispersed
Bma01g02725 Bma-Chr1:84626372 Bma04g01517 Bma-Chr4:51197814 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56836 PF12796 Ank_2 1.50E-09 CL0465 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma01g02725 - - mnt:21390368 974.541