Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00008 ATGGCTCTGTTTCGAAAGTTCTTTTATAGGAAGCCACCGGACGGGCTCTTGGAGATTGCCGAAAGGGTCTACGTGTTCGATTGCTGCTTTACAACCAATGTTTTGGATGACGATGAATATAAAGTTTACATAGGAGGTATAGCTAATCAAGTGAGGGGGCATCTCCCTGATGCTTCATTCATGGTGTTTAACTTTCGAGAAGGAGAGAAACAAAGCCTGATTTCTAAGATATTGTCTGAGTATGACATGACTGTGATGGACTACCCTCGCCATTACGAGGGTTGTCCTCTTCTTACAATGGAGATGATCCATCACTTCTTGAGATCCAGTGAAAGCTGGCTTTCCCTTGGCCAACAAAATGTGCTCTTGATGCATTGTGAGCGAGGCGGGTGGCCCGTCTTGGCTTTTATGTTGGCTGCTCTCTTAATCTATAGGAAGCAGTACGTTGGTGAACAAAAAACTTTGGATATGATTTACAAACAGGCACCTCAAGAGCTTTTGCTTCTAATGTCTCCCCTCAACCCCATGCCATCTCAGTTGAGGTACCTCCAGTATATCTTGAGAAGAAATGTTGCCTCAGAATGGCCTCCGCTGGATAGAGCCCTTACATTGGACTGCATCATCATTAGATTCATTCCTAATATGGATGGAGAAGGTGGTTGTCGTCCTATATTTAGAATATATGGACAGGATCCCTTTATGGCTGCTGATAGAACTCCCAAAGTTCTTTTCTCAACTCCAAAAAGGAGCAAATTCGTTCGACACCACAAGCAGGAAGATTGCGAGCTAGTCAAAATTGATATTCACTGCCATATACAAGGTGATGTAGTCCTTGAATGTATTAGTTTAGACAATGATTTGGAACGTGAAGAGATAATGTTCCGCATCATGTTCAATACGGCTTTTATAAGGTCGAATATTTTGATGTTTAGTCGGGATGACCTTGATATTTTATGGAATGCTAAGGATCAGTTCCCCAAGGATTTCAGAGCAGAGTCAAGTACTATTTTTTTTTTTAGAAATGACACTCTGTGTAAATTCATGAAGGTTCTTTTCTCGGAGATGGATGCCGAGACTTCTCTTATTTCAGTTGATTTGCCGAATATTGAGGAGAAAGAGGGCCTCCCAATCGAAGCATTTAATAAAGTTCAAGAGATATTTAGCAACATGAATTGGATAGATCCACAAACACAGCAAATCTCATCCCCAAAAACCCCTAAAGGAAACATGGTTGAAGAAACAGGAAACTTTGCAGGTCCTGAGGAACTAAAAGCAGAACCAAAATCAGCTGATGATGACTTACAAGTCTGCTCTCTCAATGATCAGAAAGATCAATCTATACCATGTTCTAAACCATCTTCCGCTGCAGACTCAGCCGGAATGACGATCCAGAGATCCTCTAAGTCTAAGATCTTATCTTTTTCTGCACCAGTTTCTTATAGTAATTCCTTGCAAGGGTCACCTGCACCCATATCCAGATATCATAGTGCACCCTCAGCTGTTGGCATTACAGCTCTGTTGCGCGACCATGCAACTTCAGAGTCTTGCCAAGTTATTAGTCCAGAAGCGGTATTGCCATCTTCTTCTTCTATCTCGCCATCTCTAGCTAATGTATTTAAGCCTTTGGAGCCGATAATTGTTCGTATTCCGCCATCTCCACTGCTTACTCCTCCTCAAGAACTATTTCAGCCTAAACCTTCAGATGAAACGAAACCTTCAGAGAGATTAGCTCCCATCCCCTCTCCCCCTCCTCCACCACCTTTAGCCTGGTCATTTTCATCTTCACCTGTCAAACAAGCAAGTCTTCCACTCCCTCCCCCTCCACCTCCTCCACCTCCACCTCCACCTTCTCCCCCCCTTTCTTCTGACATAATCACTCTCCCACCTCCTGCTTTTTCTACAATATTATCATCTAGATTGAGTAACTCTTTATCAACGCCTCCTCCTCCTCCTCCACCCCCTAGTGTACCTTCCGGACAATTTTCTGTTTCTTCAACGATGCCTAGAGTGAGTAACTCTCTAGCAACGCGTTCACCTCCTCCTCCTCCACCTCCTCCACCCCTTAGTGTAACTTCAGGACCATTTTCTGTGTCTCCAAGGATGCCTAGTGTGAGTAACTCTCTAGCAACGCCTTCTCCTCCTCCTCCTCCTCCTCCACCCCCTAGTGTACCTTCAGGACCATTTTCTGTTTCTTCAAGGATGCCTAGTGTGAGTAACTCTCTAGCAACGCCTCCTCCTCCTCCTCCACCCCCTAGTGTACCTTCAGGACCATTTTCTGTATCTTCAAGGATGCCTAGTGTGAGTAACTCTCTAGCAACGCCTCCCCCTCCTCCTCTCCCACCCTCTAGTGTACCTTCAGGAGCATTTTCTGTTTCTTCTAGGCTGCCTATAAAGAATTTGGCAGATAAGTCTGTACCTCTTTCCCCGCCACCACCACCTCCTCCGCCTAATCTCAATTCAAAAGAATCAGCATCAAATAATCATGCACCAACATCTCCTATCCCACCACCTCCAGCTCCTTTGTCCAATGGTTTAACAAAAGCTGGTGATGCATCTTCAAATTCTAGAGCTACTAATAGCAAAATACCTGCAATTCCTGGGCCCCCTTCTAGTCTTGCATTCAATTCAAAAGGTCGAGCCCCACCACGTACAGGTGCCAAAAATCTGGCTCAAGGTAAAAAATCAAACCTGAAACCCTATCACTGGCTCAAGTTAACAAGGGCTGTGCAAGGAAGTTTATGGGCAGAGGCACAAAAAACTGATGAAGTTTCTAAGGCTCCAGAGTTTGATATGTCAGAACTTGAGTCTCTTTTTGCTGCTACTGCTCCAAATTCAGATAATGGGAGAACTGACGACAAGTCAAAACGCCGTGCATCAGCAAATAAAGCAGACAAAGTGCAGTTGATTGAGCTGAGGCGGGCAAATAATTGTGAGATCATGCTTACCAAGGTTAAGATTCCATTGCCTGATTTGATGAGTTCAGTGCTAGCCTTGGATGAAGCAGCATTGGATGCCGATCAAATCGAGAATCTCATCAAGTTTTGTCCGACAAAGGAAGAGATGGAGCTACTCAAGGGTTATGGTGGAGATAAAGAAAGTTTGGGAAAATGCGAACAGTTCTTCTTAGAATTGATGAAAATACCGCGTGTAGAGCCCAAGCTAAGAGTATTTTCTTTCAAGATTCAGTTTAGATCCCAGGTGAGGGGACAAGCATTTGAAACGCTTATTACCAGTTATTTTACATTCAGCTGTTCAGTGAAGTTGAAAAAAATACTGCAAACCATTCTTTCTTTGGGAAATGCTCTGAATCACGGAACCGCGAGGGGTTCGGCTGTCGGATTTCGTTTGGATAGTCTTCTTAAACTTACTGACACTCGAGCTCGGAACAACAGAATGACTCTTATGCATTATCTCTGTAAGGTACTTGCCGAGAAATTGCCTGAACTTCTAGATTTTCCGAAAGATCTAAAGAACTTGGAGGCGTCGACGAAGATACAATTGAAGTATTTAGCGGAGGAAATGCAAGCCATTAGTAAGGGGATTGAGAAGGTTGTACAGGAATTAACATTTTCAGATAATGATGGTCCAGTTTCAGAAAATTTTTCCAAGACGGTAAAGGGTTTTCTTAATGATGCCGAGGCCGAAGTGAGGTCTCTGGCTTCGCTCTATTCTAACGTGGGAAGAAATGCAGATGCATTGGCTTTCTATTTTGGTGAAGATCCAGCTCGCTGTCCATTTGAACAAGTTGTATCCACGTTGCTCAACTTTGTTAAAATGTTCAGTCGAGCACACGAGGAAAACTGCAAGCAGATAGAATATGAAAAGAAGAAAGCACAGAAGGAAGCAAACGAGAAGATGAAGATAGGTTCCCCGAGAAAAGTCGACTCTGACCGCTCGCTTTCTTCGCCGATGAAGAATCGAGGCATTACATGA 3933 43.81 MALFRKFFYRKPPDGLLEIAERVYVFDCCFTTNVLDDDEYKVYIGGIANQVRGHLPDASFMVFNFREGEKQSLISKILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYVGEQKTLDMIYKQAPQELLLLMSPLNPMPSQLRYLQYILRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTPKVLFSTPKRSKFVRHHKQEDCELVKIDIHCHIQGDVVLECISLDNDLEREEIMFRIMFNTAFIRSNILMFSRDDLDILWNAKDQFPKDFRAESSTIFFFRNDTLCKFMKVLFSEMDAETSLISVDLPNIEEKEGLPIEAFNKVQEIFSNMNWIDPQTQQISSPKTPKGNMVEETGNFAGPEELKAEPKSADDDLQVCSLNDQKDQSIPCSKPSSAADSAGMTIQRSSKSKILSFSAPVSYSNSLQGSPAPISRYHSAPSAVGITALLRDHATSESCQVISPEAVLPSSSSISPSLANVFKPLEPIIVRIPPSPLLTPPQELFQPKPSDETKPSERLAPIPSPPPPPPLAWSFSSSPVKQASLPLPPPPPPPPPPPPSPPLSSDIITLPPPAFSTILSSRLSNSLSTPPPPPPPPSVPSGQFSVSSTMPRVSNSLATRSPPPPPPPPPLSVTSGPFSVSPRMPSVSNSLATPSPPPPPPPPPSVPSGPFSVSSRMPSVSNSLATPPPPPPPPSVPSGPFSVSSRMPSVSNSLATPPPPPLPPSSVPSGAFSVSSRLPIKNLADKSVPLSPPPPPPPPNLNSKESASNNHAPTSPIPPPPAPLSNGLTKAGDASSNSRATNSKIPAIPGPPSSLAFNSKGRAPPRTGAKNLAQGKKSNLKPYHWLKLTRAVQGSLWAEAQKTDEVSKAPEFDMSELESLFAATAPNSDNGRTDDKSKRRASANKADKVQLIELRRANNCEIMLTKVKIPLPDLMSSVLALDEAALDADQIENLIKFCPTKEEMELLKGYGGDKESLGKCEQFFLELMKIPRVEPKLRVFSFKIQFRSQVRGQAFETLITSYFTFSCSVKLKKILQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNRMTLMHYLCKVLAEKLPELLDFPKDLKNLEASTKIQLKYLAEEMQAISKGIEKVVQELTFSDNDGPVSENFSKTVKGFLNDAEAEVRSLASLYSNVGRNADALAFYFGEDPARCPFEQVVSTLLNFVKMFSRAHEENCKQIEYEKKKAQKEANEKMKIGSPRKVDSDRSLSSPMKNRGIT 1310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 196173 202740 + Bma014466.1 Bma02g00008 77258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00008 1310 MobiDBLite consensus disorder prediction 627 643 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 644 658 - -
Bma02g00008 1310 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Bma02g00008 1310 Coils Coil 1261 1281 - -
Bma02g00008 1310 Pfam Formin Homology 2 Domain 892 1261 IPR015425 -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 600 625 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 659 674 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 708 726 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 846 865 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 576 591 - -
Bma02g00008 1310 Gene3D - 201 338 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 939 959 - -
Bma02g00008 1310 Gene3D Protein tyrosine phosphatase superfamily 15 200 IPR029021 -
Bma02g00008 1310 Pfam C2 domain of PTEN tumour-suppressor protein 200 332 IPR014020 -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 740 756 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 805 819 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 693 707 - -
Bma02g00008 1310 PANTHER FORMIN-J 1 770 - -
Bma02g00008 1310 PANTHER FORMIN-J 773 1290 - -
Bma02g00008 1310 Gene3D Formin, FH2 domain 886 1271 IPR042201 -
Bma02g00008 1310 ProSiteProfiles Formin homology-2 (FH2) domain profile. 887 1286 IPR015425 -
Bma02g00008 1310 SUPERFAMILY Formin homology 2 domain (FH2 domain) 900 1280 - -
Bma02g00008 1310 SMART PTEN_C2_2 197 340 IPR014020 -
Bma02g00008 1310 SMART it6_source 607 1302 IPR015425 -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 675 692 - -
Bma02g00008 1310 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 185 IPR029021 -
Bma02g00008 1310 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 332 IPR035892 -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 770 784 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 1279 1300 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 553 893 - -
Bma02g00008 1310 MobiDBLite consensus disorder prediction 1279 1310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00008 - - - vri:117912922 1396.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00008 Bma-Chr2:196173 Bma06g00166 Bma-Chr6:2113391 4.44E-156 dispersed
Bma02g00008 Bma-Chr2:196173 Bma02g00009 Bma-Chr2:210466 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g572 . Blo12g01054 . Bda03g00096 . . . . . . Cma01g01662 . Car09g00362 . . . Cpe06g00297 . . . . . . . Cla05g01683 Cam05g1798 Cec05g1807 Cco05g1867 Clacu05g1785 Cmu05g1671 Cre05g1800 . . Cone17ag0984 Cone20ag0324 Lsi04g02074 . . . . . . . Bpe14g00599 . . Bma02g00008 Sed05g1743 Cmo01g01711 Cmo09g00417 Cma09g00412 . Car01g01277 . . Cpe02g00327 Bhi09g03005 Tan01g3567 Cmetu07g0822 . Hepe01g1968 Mch11g0505 . . . . . . . . . . . Cme07g00118
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma01g02539 . 23 322 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 2.3e-116 415.6
Bma04g01172 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma04g01175 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma08g00279 . 2 197 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 3.1e-59 227.3
Bma04g01172 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma04g01175 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma03g01302 . 1 190 Protein tyrosine phosphatase (PTP) family AT2G04550 67.9 2.5e-66 248.4
Bma03g00369 . 17 294 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 4.2e-116 414.5
Bma03g00203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 69.3 1.2e-107 386.3
Bma01g00998 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 3.6e-194 674.5
Bma01g00978 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 70.4 6.7e-193 670.2
Bma02g01405 . 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 57.0 1.1e-70 263.5
Bma03g01308 BCT 20 210 Protein tyrosine phosphatase (PTP) family AT2G32960 55.6 1.8e-65 246.1
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT2G32960 59.2 8.1e-50 194.1
Bma02g00600 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.1 1.4e-49 193.4
Bma08g00533 BCT 51 152 Protein tyrosine phosphatase (PTP) family AT2G32960 60.3 1.9e-38 156.4
Bma14g00635 . 1 319 Protein tyrosine phosphatase (PTP) family AT2G35680 56.4 6.6e-100 360.9
Bma01g00214 . 6 266 Protein tyrosine phosphatase (PTP) family AT2G35680 52.3 2.4e-78 289.3
Bma02g01405 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 2.5e-75 278.5
Bma03g01308 BCT 36 210 Protein tyrosine phosphatase (PTP) family AT4G03960 67.4 3.5e-69 258.1
Bma02g00600 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.5e-53 204.9
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT4G03960 66.9 3.7e-50 194.9
Bma08g00533 BCT 30 152 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 1.3e-39 159.8
Bma02g00600 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 3.7e-82 301.2
Bma03g01308 BCT 45 202 Protein tyrosine phosphatase (PTP) family AT3G02800 62.0 3.5e-56 214.9
Bma02g01405 . 47 205 Protein tyrosine phosphatase (PTP) family AT3G02800 61.0 7.8e-56 213.8
Bma08g00538 . 1 125 Protein tyrosine phosphatase (PTP) family AT3G02800 57.6 1.9e-38 156.0
Bma03g00116 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 5.9e-59 226.1
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g00514 BCT 8 605 Protein tyrosine phosphatase (PTP) family AT3G19420 66.9 1.0e-228 789.6
Bma03g01356 BCT 32 610 Protein tyrosine phosphatase (PTP) family AT3G19420 67.1 5.0e-223 770.8
Bma15g00872 . 34 591 Protein tyrosine phosphatase (PTP) family AT3G19420 57.4 4.0e-188 654.8
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma14g00419 . 56 243 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 2.8e-74 275.4
Bma12g00216 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 9.8e-111 396.7
Bma10g00319 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 2.2e-288 988.0
Bma10g00319 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 5.9e-262 900.2
Bma10g00319 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.9 7.7e-187 650.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00008 Bma_Chr02 FPKM 20.961805 21.811213 30.61097 26.836817 26.242132 26.236061 25.088646 27.835093 26.609118 28.233379