Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma02g00008 | ATGGCTCTGTTTCGAAAGTTCTTTTATAGGAAGCCACCGGACGGGCTCTTGGAGATTGCCGAAAGGGTCTACGTGTTCGATTGCTGCTTTACAACCAATGTTTTGGATGACGATGAATATAAAGTTTACATAGGAGGTATAGCTAATCAAGTGAGGGGGCATCTCCCTGATGCTTCATTCATGGTGTTTAACTTTCGAGAAGGAGAGAAACAAAGCCTGATTTCTAAGATATTGTCTGAGTATGACATGACTGTGATGGACTACCCTCGCCATTACGAGGGTTGTCCTCTTCTTACAATGGAGATGATCCATCACTTCTTGAGATCCAGTGAAAGCTGGCTTTCCCTTGGCCAACAAAATGTGCTCTTGATGCATTGTGAGCGAGGCGGGTGGCCCGTCTTGGCTTTTATGTTGGCTGCTCTCTTAATCTATAGGAAGCAGTACGTTGGTGAACAAAAAACTTTGGATATGATTTACAAACAGGCACCTCAAGAGCTTTTGCTTCTAATGTCTCCCCTCAACCCCATGCCATCTCAGTTGAGGTACCTCCAGTATATCTTGAGAAGAAATGTTGCCTCAGAATGGCCTCCGCTGGATAGAGCCCTTACATTGGACTGCATCATCATTAGATTCATTCCTAATATGGATGGAGAAGGTGGTTGTCGTCCTATATTTAGAATATATGGACAGGATCCCTTTATGGCTGCTGATAGAACTCCCAAAGTTCTTTTCTCAACTCCAAAAAGGAGCAAATTCGTTCGACACCACAAGCAGGAAGATTGCGAGCTAGTCAAAATTGATATTCACTGCCATATACAAGGTGATGTAGTCCTTGAATGTATTAGTTTAGACAATGATTTGGAACGTGAAGAGATAATGTTCCGCATCATGTTCAATACGGCTTTTATAAGGTCGAATATTTTGATGTTTAGTCGGGATGACCTTGATATTTTATGGAATGCTAAGGATCAGTTCCCCAAGGATTTCAGAGCAGAGTCAAGTACTATTTTTTTTTTTAGAAATGACACTCTGTGTAAATTCATGAAGGTTCTTTTCTCGGAGATGGATGCCGAGACTTCTCTTATTTCAGTTGATTTGCCGAATATTGAGGAGAAAGAGGGCCTCCCAATCGAAGCATTTAATAAAGTTCAAGAGATATTTAGCAACATGAATTGGATAGATCCACAAACACAGCAAATCTCATCCCCAAAAACCCCTAAAGGAAACATGGTTGAAGAAACAGGAAACTTTGCAGGTCCTGAGGAACTAAAAGCAGAACCAAAATCAGCTGATGATGACTTACAAGTCTGCTCTCTCAATGATCAGAAAGATCAATCTATACCATGTTCTAAACCATCTTCCGCTGCAGACTCAGCCGGAATGACGATCCAGAGATCCTCTAAGTCTAAGATCTTATCTTTTTCTGCACCAGTTTCTTATAGTAATTCCTTGCAAGGGTCACCTGCACCCATATCCAGATATCATAGTGCACCCTCAGCTGTTGGCATTACAGCTCTGTTGCGCGACCATGCAACTTCAGAGTCTTGCCAAGTTATTAGTCCAGAAGCGGTATTGCCATCTTCTTCTTCTATCTCGCCATCTCTAGCTAATGTATTTAAGCCTTTGGAGCCGATAATTGTTCGTATTCCGCCATCTCCACTGCTTACTCCTCCTCAAGAACTATTTCAGCCTAAACCTTCAGATGAAACGAAACCTTCAGAGAGATTAGCTCCCATCCCCTCTCCCCCTCCTCCACCACCTTTAGCCTGGTCATTTTCATCTTCACCTGTCAAACAAGCAAGTCTTCCACTCCCTCCCCCTCCACCTCCTCCACCTCCACCTCCACCTTCTCCCCCCCTTTCTTCTGACATAATCACTCTCCCACCTCCTGCTTTTTCTACAATATTATCATCTAGATTGAGTAACTCTTTATCAACGCCTCCTCCTCCTCCTCCACCCCCTAGTGTACCTTCCGGACAATTTTCTGTTTCTTCAACGATGCCTAGAGTGAGTAACTCTCTAGCAACGCGTTCACCTCCTCCTCCTCCACCTCCTCCACCCCTTAGTGTAACTTCAGGACCATTTTCTGTGTCTCCAAGGATGCCTAGTGTGAGTAACTCTCTAGCAACGCCTTCTCCTCCTCCTCCTCCTCCTCCACCCCCTAGTGTACCTTCAGGACCATTTTCTGTTTCTTCAAGGATGCCTAGTGTGAGTAACTCTCTAGCAACGCCTCCTCCTCCTCCTCCACCCCCTAGTGTACCTTCAGGACCATTTTCTGTATCTTCAAGGATGCCTAGTGTGAGTAACTCTCTAGCAACGCCTCCCCCTCCTCCTCTCCCACCCTCTAGTGTACCTTCAGGAGCATTTTCTGTTTCTTCTAGGCTGCCTATAAAGAATTTGGCAGATAAGTCTGTACCTCTTTCCCCGCCACCACCACCTCCTCCGCCTAATCTCAATTCAAAAGAATCAGCATCAAATAATCATGCACCAACATCTCCTATCCCACCACCTCCAGCTCCTTTGTCCAATGGTTTAACAAAAGCTGGTGATGCATCTTCAAATTCTAGAGCTACTAATAGCAAAATACCTGCAATTCCTGGGCCCCCTTCTAGTCTTGCATTCAATTCAAAAGGTCGAGCCCCACCACGTACAGGTGCCAAAAATCTGGCTCAAGGTAAAAAATCAAACCTGAAACCCTATCACTGGCTCAAGTTAACAAGGGCTGTGCAAGGAAGTTTATGGGCAGAGGCACAAAAAACTGATGAAGTTTCTAAGGCTCCAGAGTTTGATATGTCAGAACTTGAGTCTCTTTTTGCTGCTACTGCTCCAAATTCAGATAATGGGAGAACTGACGACAAGTCAAAACGCCGTGCATCAGCAAATAAAGCAGACAAAGTGCAGTTGATTGAGCTGAGGCGGGCAAATAATTGTGAGATCATGCTTACCAAGGTTAAGATTCCATTGCCTGATTTGATGAGTTCAGTGCTAGCCTTGGATGAAGCAGCATTGGATGCCGATCAAATCGAGAATCTCATCAAGTTTTGTCCGACAAAGGAAGAGATGGAGCTACTCAAGGGTTATGGTGGAGATAAAGAAAGTTTGGGAAAATGCGAACAGTTCTTCTTAGAATTGATGAAAATACCGCGTGTAGAGCCCAAGCTAAGAGTATTTTCTTTCAAGATTCAGTTTAGATCCCAGGTGAGGGGACAAGCATTTGAAACGCTTATTACCAGTTATTTTACATTCAGCTGTTCAGTGAAGTTGAAAAAAATACTGCAAACCATTCTTTCTTTGGGAAATGCTCTGAATCACGGAACCGCGAGGGGTTCGGCTGTCGGATTTCGTTTGGATAGTCTTCTTAAACTTACTGACACTCGAGCTCGGAACAACAGAATGACTCTTATGCATTATCTCTGTAAGGTACTTGCCGAGAAATTGCCTGAACTTCTAGATTTTCCGAAAGATCTAAAGAACTTGGAGGCGTCGACGAAGATACAATTGAAGTATTTAGCGGAGGAAATGCAAGCCATTAGTAAGGGGATTGAGAAGGTTGTACAGGAATTAACATTTTCAGATAATGATGGTCCAGTTTCAGAAAATTTTTCCAAGACGGTAAAGGGTTTTCTTAATGATGCCGAGGCCGAAGTGAGGTCTCTGGCTTCGCTCTATTCTAACGTGGGAAGAAATGCAGATGCATTGGCTTTCTATTTTGGTGAAGATCCAGCTCGCTGTCCATTTGAACAAGTTGTATCCACGTTGCTCAACTTTGTTAAAATGTTCAGTCGAGCACACGAGGAAAACTGCAAGCAGATAGAATATGAAAAGAAGAAAGCACAGAAGGAAGCAAACGAGAAGATGAAGATAGGTTCCCCGAGAAAAGTCGACTCTGACCGCTCGCTTTCTTCGCCGATGAAGAATCGAGGCATTACATGA | 3933 | 43.81 | MALFRKFFYRKPPDGLLEIAERVYVFDCCFTTNVLDDDEYKVYIGGIANQVRGHLPDASFMVFNFREGEKQSLISKILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYVGEQKTLDMIYKQAPQELLLLMSPLNPMPSQLRYLQYILRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTPKVLFSTPKRSKFVRHHKQEDCELVKIDIHCHIQGDVVLECISLDNDLEREEIMFRIMFNTAFIRSNILMFSRDDLDILWNAKDQFPKDFRAESSTIFFFRNDTLCKFMKVLFSEMDAETSLISVDLPNIEEKEGLPIEAFNKVQEIFSNMNWIDPQTQQISSPKTPKGNMVEETGNFAGPEELKAEPKSADDDLQVCSLNDQKDQSIPCSKPSSAADSAGMTIQRSSKSKILSFSAPVSYSNSLQGSPAPISRYHSAPSAVGITALLRDHATSESCQVISPEAVLPSSSSISPSLANVFKPLEPIIVRIPPSPLLTPPQELFQPKPSDETKPSERLAPIPSPPPPPPLAWSFSSSPVKQASLPLPPPPPPPPPPPPSPPLSSDIITLPPPAFSTILSSRLSNSLSTPPPPPPPPSVPSGQFSVSSTMPRVSNSLATRSPPPPPPPPPLSVTSGPFSVSPRMPSVSNSLATPSPPPPPPPPPSVPSGPFSVSSRMPSVSNSLATPPPPPPPPSVPSGPFSVSSRMPSVSNSLATPPPPPLPPSSVPSGAFSVSSRLPIKNLADKSVPLSPPPPPPPPNLNSKESASNNHAPTSPIPPPPAPLSNGLTKAGDASSNSRATNSKIPAIPGPPSSLAFNSKGRAPPRTGAKNLAQGKKSNLKPYHWLKLTRAVQGSLWAEAQKTDEVSKAPEFDMSELESLFAATAPNSDNGRTDDKSKRRASANKADKVQLIELRRANNCEIMLTKVKIPLPDLMSSVLALDEAALDADQIENLIKFCPTKEEMELLKGYGGDKESLGKCEQFFLELMKIPRVEPKLRVFSFKIQFRSQVRGQAFETLITSYFTFSCSVKLKKILQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNRMTLMHYLCKVLAEKLPELLDFPKDLKNLEASTKIQLKYLAEEMQAISKGIEKVVQELTFSDNDGPVSENFSKTVKGFLNDAEAEVRSLASLYSNVGRNADALAFYFGEDPARCPFEQVVSTLLNFVKMFSRAHEENCKQIEYEKKKAQKEANEKMKIGSPRKVDSDRSLSSPMKNRGIT | 1310 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 196173 | 202740 | + | Bma014466.1 | Bma02g00008 | 77258 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 627 | 643 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 644 | 658 | - | - | |
| Bma02g00008 | 1310 | ProSiteProfiles | C2 tensin-type domain profile. | 199 | 338 | IPR014020 | - | |
| Bma02g00008 | 1310 | Coils | Coil | 1261 | 1281 | - | - | |
| Bma02g00008 | 1310 | Pfam | Formin Homology 2 Domain | 892 | 1261 | IPR015425 | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 600 | 625 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 659 | 674 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 708 | 726 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 846 | 865 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 576 | 591 | - | - | |
| Bma02g00008 | 1310 | Gene3D | - | 201 | 338 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 939 | 959 | - | - | |
| Bma02g00008 | 1310 | Gene3D | Protein tyrosine phosphatase superfamily | 15 | 200 | IPR029021 | - | |
| Bma02g00008 | 1310 | Pfam | C2 domain of PTEN tumour-suppressor protein | 200 | 332 | IPR014020 | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 740 | 756 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 805 | 819 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 693 | 707 | - | - | |
| Bma02g00008 | 1310 | PANTHER | FORMIN-J | 1 | 770 | - | - | |
| Bma02g00008 | 1310 | PANTHER | FORMIN-J | 773 | 1290 | - | - | |
| Bma02g00008 | 1310 | Gene3D | Formin, FH2 domain | 886 | 1271 | IPR042201 | - | |
| Bma02g00008 | 1310 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 887 | 1286 | IPR015425 | - | |
| Bma02g00008 | 1310 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 900 | 1280 | - | - | |
| Bma02g00008 | 1310 | SMART | PTEN_C2_2 | 197 | 340 | IPR014020 | - | |
| Bma02g00008 | 1310 | SMART | it6_source | 607 | 1302 | IPR015425 | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 675 | 692 | - | - | |
| Bma02g00008 | 1310 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 17 | 185 | IPR029021 | - | |
| Bma02g00008 | 1310 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 332 | IPR035892 | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 770 | 784 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 1279 | 1300 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 553 | 893 | - | - | |
| Bma02g00008 | 1310 | MobiDBLite | consensus disorder prediction | 1279 | 1310 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma02g00008 | Bma-Chr2:196173 | Bma06g00166 | Bma-Chr6:2113391 | 4.44E-156 | dispersed | |
| Bma02g00008 | Bma-Chr2:196173 | Bma02g00009 | Bma-Chr2:210466 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma02g00008 | - | - | vri:117912922 | 1396.33 |