Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00009 GTGTTCGATTGCTGCTTTACAACCAATGTTTTGGATGACGATGAATATAAAGTTTACATAGGAGGTATAGCTAATCAAGTGAGGGGGCATCTCCCTGATGCTTCATTCATGGTGTTTAACTTTCGAGAAGGAGAGAAACAAAGCCTGATTTCTAAGATATTGTCTGAGTATGACATGACTGTGATGGACTACCCTCGCCATTACGAGGGTTGTCCTCTTCTTACAATGGAGATGATCCATCACTTCTTGAGATCCAGTGAAAGCTGGCTTTCCCTTGGCCAACAAAATGTGCTCTTGATGCATTGTGAGCGAGGCGGGTGGCCCGTCTTGGCTTTTATGTTGGCTGCTCTCTTAATCTATAGGAAGCAGTACGTTGGTGAACAAAAAACTTTGGATATGATTTACAAACAGGCACCTCAAGAGCATTTGCTTCTAATGTCTCCCCTCAACCCCATGCCATCTCAGTTGAGGTACCTCCAATATATCTTGAGAAGAAATGTTGCCTCAGAATGGCCTCCGCTGGATAGAGCCCTTACATTGGACTGCATCATCATTAGATTCATTCCTAATATGGATGGAGAAGGTGGTTGTCGTCCTATATTTAGAATATATGGACAGGATCCCTTTATGGCTGCTGATAGAACTCCCAAAGTTCTTTTCTCAACTCCAAAAAGGAGCAAATTCGTTCGACACCACAAGCAGGAAGATTGCGAGCTAGTCAAAATTGATATTCACTGCCATATACAAGGTGATGTAGTCCTTGAATGTATTAGTTTAGACAATGATTTGGAACGTGAAGAGATAATGTTCCGCATCATGTTCAATAATGCTTTTATAAGGTCGAATATTTTGATGTTTAGTCGGGATGACCTTGATATTTTATGGAATGCTAAGGATCAGTTCCCCAAGGATTTCAGAGCAAAGGTTCTTTTCTCGGAGATAGATGCTGAGACTTCTCTTATTTCAGTTGATTTGCCGAATATTGAGGAGAAAGAGGGCCTCCCAATCGAAGCATTTAATAAAGTTCAAGAGATATTTAGCAACATGAATTGGATAGATCCACAAACACAGCAAATCTCATCCCCAAAAACCCCTAAAGGAAACATGGTTGAAGAAACAGGAAACTTTGCAGGTCCTGAGGAACTAAAAGCAGAACCAAAATCAGCTGAGGATGACTTACAAGTCTGCTCACTCAATGATCAGAAAGACCAATCTATACCATGTTCTAAACCATCTTCGGCTGCAGACTCAGAGATCCTCAAATCTAATATCTTATCTTTTTCTGCACCAGTTTCTTATAGTAATTCCTTGCAAGGGTCACCTAAAGCGGTATTGCCATCTTCTTCTATCTCGCCATCTCTAACTAATGTATTTAAGCCTTTGGAGCCGATAATTGTTCGTATTCCGCCATGTCCACTGCTTACTCCTCCCCAAGAACTATTTCAGCCTAAACCTTCAGATGCAACGAAACCTCCAGTGAGATTAGCTCCCATCCCCTCTCCCCCTCCCTCCTCCACCACCTTTAGCCTGGTCATTTTCATCTTCACCTGTCAAACAAGCAAGTCTTCCACTCCCTCCCCCTCCACCTCCACCTCCACCTTCTCCCCCCCACTTTCTTCTGACATAATCACTCTCCCACCTCCTGCTTTTTCTACGATATTATCATCTAGATTGAGTAACTCTTTATCAACGCCTCCTCCTCCTCCACCCCCTAGTGTACCTTCCGGACAATTTTCTGTTTCTTCAAGGATGCCTAGAGTGAGTAACTCTCTAGCAACGCCTTCTCCTCCTCCTCCTCCTCCACCTCCTCCACCCCTTAGTGTAACTTCAGGACCATTTTCTGTGTCTTCAAGGATGCCTAGTGTAAGTAACTCTCTAGCAACGCCTTCTCCTCCTCCACCCCCAAGTGTACCTTCAGGACCATTTTCTGTTTCTTCAAGGATGCCTAGTGTGAGTAACTCTCTAGCAACGCCTCCTCCTCCTCCTCCACCCCCTAGTGTACCTTCAGGACCATTTTCTGTATCTTCAAGGATGCCAAGTGTGAGTAACTCTCTAGCAACACCTCCCCCTCCTCCTCTCCCACCTTCTAGTGTACCTTCAGGAGCATTTTCTGTTTCTTCTAGGCTGCCTATAAAGAATTTGGCAGATAAGTCTGTACCTCTTTCCCCGCCGCCACCACCTCCTCCTCCTAATCTCAATTCAAAAGAATCAGCATCAAATAATCATGCACCGACATCTCCTATCCCACCACCTCCAGCTCCTTTGTCCAATGGTTTAACAAAAGCCGGTGATGCATCTTCAAATTCTAGAGCTACTAATAGCAAAATACCTGCAATTCCTGGGCCCCCTTCTAGTCTTTCATTCAATTCAAAAGGTCGAGCCCCACCACGTACAGGTGCCAAAAATCTGGCTCAAGGTAAAAAATCAAACCTGAAACCCTATCACTGGCTCAAGTTAACAAGGGCTGTGCAAGGAAGTTTATGGGCAGAGGCACAAAAAACTGATGAAGTTTCTAAGCCTCCAGAGTTTGATATGTCAGAACTTGAGTCTCTTTTTGCTGCTACTGCTCCAAATTCAGATAATGGGAGAACTGGAGACAAGTCAAAACGCCGTGCATCAGCAAATAAAGCAGACAAAGTGCAGTTGATTGAGCTGAGGCGGGCAAATAATTGTGAGATCATGCTTACCAAGGTTAAGATTCCATTGCCTGATTTGATGAGTTCAGTGCTATCCTTGGATGAAGCAACATTGGATGCCGATCAAATCGAGAATCTCATCAAGTTTTGTCCGACAAAGGAAGAGATGGAGCTACTCAAGGGTTATGGTGGAGATAAAGAAAGTTTGGGAAAATGCAAACAGTTCTTAGAATTGATGAAAATAACACGTATAGAGCCCAAGCTAAGAGTATTTTCTTTCAAGATTCAGTTTAGATCCCAGATCAAGAGTTCAGTGAAGTTGAAAAAAATATTGCAAACCATTCTTTCTTTGGCAAATGCTCTGAATCATGGAACCGCGATGGGTGATTCGGCTGTCAGATTTCGTTTGGATAGTCTTTTTAAACTTACTGACACTCGAGCCCGGAACAACAGAATGACTCTTATGCATTATCTCTGTAAGGTACTTGCCGAGAAATTGCCTGAACTTCTAGATTTTCCGAAAGATCTAAAGAATTTAGAGGCGTCAACGAAGATACAATTGATGTATTTAGTGGAGGAAATGCAAGCCATTAGTAAGGGGATTGAGAAGGTTGTACAGGAATTAACATTTTCAGATAATGATGGTCCAGTTTCAGAAAATTTTTCCAAGACTGTAAAGGGTTTTCTTAATGATGACAAGGCCGAAGTGAGGTCTCTGGCTTTGCTCTATTCTAACGTGGGAAGAAATGCAGATGCATTGGCTTTCTATTTTGGTGAAGATCCAGCTCGCTGTCCATTTGAACAAGTTGTATCCACGTTGCTCAACTTTGTTAAAATGTTCAGTCGAGCACACGAGGAAAACTGCAAGCAGATAGAATATGAAAAGAGGAAAGCACAGAAGGAAGCAAACGAGAAGATGAAGATAGGTTCCCCGAGAAAAGTCGACTCGCTTTCTTCGCCGATGAAGAATCGAGGCATTACATGA 3621 43.0 VFDCCFTTNVLDDDEYKVYIGGIANQVRGHLPDASFMVFNFREGEKQSLISKILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYVGEQKTLDMIYKQAPQEHLLLMSPLNPMPSQLRYLQYILRRNVASEWPPLDRALTLDCIIIRFIPNMDGEGGCRPIFRIYGQDPFMAADRTPKVLFSTPKRSKFVRHHKQEDCELVKIDIHCHIQGDVVLECISLDNDLEREEIMFRIMFNNAFIRSNILMFSRDDLDILWNAKDQFPKDFRAKVLFSEIDAETSLISVDLPNIEEKEGLPIEAFNKVQEIFSNMNWIDPQTQQISSPKTPKGNMVEETGNFAGPEELKAEPKSAEDDLQVCSLNDQKDQSIPCSKPSSAADSEILKSNILSFSAPVSYSNSLQGSPKAVLPSSSISPSLTNVFKPLEPIIVRIPPCPLLTPPQELFQPKPSDATKPPVRLAPIPSPPPSSTTFSLVIFIFTCQTSKSSTPSPSTSTSTFSPPLSSDIITLPPPAFSTILSSRLSNSLSTPPPPPPPSVPSGQFSVSSRMPRVSNSLATPSPPPPPPPPPPLSVTSGPFSVSSRMPSVSNSLATPSPPPPPSVPSGPFSVSSRMPSVSNSLATPPPPPPPPSVPSGPFSVSSRMPSVSNSLATPPPPPLPPSSVPSGAFSVSSRLPIKNLADKSVPLSPPPPPPPPNLNSKESASNNHAPTSPIPPPPAPLSNGLTKAGDASSNSRATNSKIPAIPGPPSSLSFNSKGRAPPRTGAKNLAQGKKSNLKPYHWLKLTRAVQGSLWAEAQKTDEVSKPPEFDMSELESLFAATAPNSDNGRTGDKSKRRASANKADKVQLIELRRANNCEIMLTKVKIPLPDLMSSVLSLDEATLDADQIENLIKFCPTKEEMELLKGYGGDKESLGKCKQFLELMKITRIEPKLRVFSFKIQFRSQIKSSVKLKKILQTILSLANALNHGTAMGDSAVRFRLDSLFKLTDTRARNNRMTLMHYLCKVLAEKLPELLDFPKDLKNLEASTKIQLMYLVEEMQAISKGIEKVVQELTFSDNDGPVSENFSKTVKGFLNDDKAEVRSLALLYSNVGRNADALAFYFGEDPARCPFEQVVSTLLNFVKMFSRAHEENCKQIEYEKRKAQKEANEKMKIGSPRKVDSLSSPMKNRGIT 1206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 210466 216500 + Bma014467.1 Bma02g00009 77259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00009 1206 MobiDBLite consensus disorder prediction 684 698 - -
Bma02g00009 1206 Gene3D - 177 316 - -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 591 609 - -
Bma02g00009 1206 PANTHER FORMIN-J 1 1189 - -
Bma02g00009 1206 SUPERFAMILY Formin homology 2 domain (FH2 domain) 814 1179 - -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 557 809 - -
Bma02g00009 1206 Coils Coil 1160 1180 - -
Bma02g00009 1206 Pfam Formin Homology 2 Domain 806 1160 IPR015425 -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 853 874 - -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 576 590 - -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 1178 1206 - -
Bma02g00009 1206 PRINTS Proline rich extensin signature 469 485 - -
Bma02g00009 1206 PRINTS Proline rich extensin signature 594 619 - -
Bma02g00009 1206 PRINTS Proline rich extensin signature 490 502 - -
Bma02g00009 1206 PRINTS Proline rich extensin signature 518 539 - -
Bma02g00009 1206 PRINTS Proline rich extensin signature 557 574 - -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 520 540 - -
Bma02g00009 1206 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 50 161 IPR029021 -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 610 625 - -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 477 503 - -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 760 792 - -
Bma02g00009 1206 Pfam C2 domain of PTEN tumour-suppressor protein 176 313 IPR014020 -
Bma02g00009 1206 Gene3D Formin, FH2 domain 820 1192 IPR042201 -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 626 640 - -
Bma02g00009 1206 Gene3D Protein tyrosine phosphatase superfamily 2 176 IPR029021 -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 719 733 - -
Bma02g00009 1206 ProSiteProfiles Formin homology-2 (FH2) domain profile. 801 1185 IPR015425 -
Bma02g00009 1206 SMART it6_source 593 1201 IPR015425 -
Bma02g00009 1206 SMART PTEN_C2_2 173 313 IPR014020 -
Bma02g00009 1206 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 314 IPR035892 -
Bma02g00009 1206 MobiDBLite consensus disorder prediction 654 670 - -
Bma02g00009 1206 ProSiteProfiles C2 tensin-type domain profile. 175 314 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00009 - - - mnt:21396398 1275.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00009 Bma-Chr2:210466 Bma06g00166 Bma-Chr6:2113391 9.63E-144 dispersed
Bma15g00872 Bma-Chr15:25723058 Bma02g00009 Bma-Chr2:210466 8.23E-07 dispersed
Bma02g00008 Bma-Chr2:196173 Bma02g00009 Bma-Chr2:210466 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma14g01856 . 445 909 FH2 protein (formin) Gene Family AT3G25500 63.5 6.7e-159 558.5
Bma03g01144 . 430 848 FH2 protein (formin) Gene Family AT3G25500 62.2 3.0e-135 479.9
Bma03g01142 BCT 432 862 FH2 protein (formin) Gene Family AT3G25500 60.8 9.7e-134 474.9
Bma06g00347 BCT 1 379 FH2 protein (formin) Gene Family AT3G25500 60.9 7.0e-116 415.6
Bma05g00280 . 481 880 FH2 protein (formin) Gene Family AT3G25500 54.9 3.1e-108 390.2
Bma14g01856 . 479 923 FH2 protein (formin) Gene Family AT2G43800 60.6 1.3e-139 494.2
Bma03g01144 . 434 869 FH2 protein (formin) Gene Family AT2G43800 53.4 6.6e-123 438.7
Bma03g01142 BCT 436 883 FH2 protein (formin) Gene Family AT2G43800 53.0 2.5e-122 436.8
Bma06g00347 BCT 1 400 FH2 protein (formin) Gene Family AT2G43800 53.5 8.9e-104 375.2
Bma12g00784 BCT 12 166 FH2 protein (formin) Gene Family AT4G15200 70.1 3.0e-55 213.0
Bma14g00359 BCT 497 646 FH2 protein (formin) Gene Family AT4G15200 63.6 1.4e-47 187.6
Bma07g01317 BCT 301 448 FH2 protein (formin) Gene Family AT4G15200 58.4 7.8e-43 171.8
Bma14g00359 BCT 270 962 FH2 protein (formin) Gene Family AT5G54650 52.1 6.3e-166 581.6
Bma12g00784 BCT 18 488 FH2 protein (formin) Gene Family AT5G54650 63.9 1.0e-163 574.3
Bma02g01338 BCT 212 687 FH2 protein (formin) Gene Family AT5G54650 61.4 8.5e-155 544.7
Bma07g01317 BCT 311 711 FH2 protein (formin) Gene Family AT5G54650 62.9 8.3e-142 501.5
Bma05g00280 . 479 885 FH2 protein (formin) Gene Family AT5G54650 51.6 1.1e-109 394.8
Bma06g00347 BCT 1 364 FH2 protein (formin) Gene Family AT5G54650 51.2 3.9e-91 333.2
Bma03g01144 . 27 877 FH2 protein (formin) Gene Family AT5G67470 54.7 9.0e-221 763.8
Bma03g01142 BCT 27 891 FH2 protein (formin) Gene Family AT5G67470 54.3 9.9e-220 760.4
Bma06g00347 BCT 2 407 FH2 protein (formin) Gene Family AT5G67470 70.7 4.7e-145 512.3
Bma14g01856 . 443 925 FH2 protein (formin) Gene Family AT5G67470 54.1 1.1e-122 438.0
Bma05g00280 . 484 883 FH2 protein (formin) Gene Family AT5G67470 53.0 6.0e-108 389.0
Bma15g00202 . 291 768 FH2 protein (formin) Gene Family AT1G59910 51.2 4.9e-121 432.6
Bma14g01752 . 395 863 FH2 protein (formin) Gene Family AT1G59910 51.4 4.1e-120 429.5
Bma15g00202 . 131 765 FH2 protein (formin) Gene Family AT1G70140 52.5 3.0e-137 486.1
Bma06g00166 CCT 1 1118 FH2 protein (formin) Gene Family AT1G31810 52.0 1.2e-220 763.8
Bma04g00272 . 579 940 FH2 protein (formin) Gene Family AT1G31810 53.5 1.4e-104 378.3
Bma06g00166 CCT 788 1109 FH2 protein (formin) Gene Family AT5G07650 72.7 3.6e-125 446.0
Bma03g00839 . 1605 1901 FH2 protein (formin) Gene Family AT5G07650 69.4 9.0e-108 388.3
Bma02g00008 . 952 1282 FH2 protein (formin) Gene Family AT5G07650 58.6 3.9e-103 372.9
Bma04g00272 . 662 931 FH2 protein (formin) Gene Family AT5G07650 59.8 2.5e-94 343.6
Bma02g00009 . 866 1181 FH2 protein (formin) Gene Family AT5G07650 55.4 6.3e-93 339.0
Bma06g00166 CCT 699 1102 FH2 protein (formin) Gene Family AT5G07770 63.5 3.9e-132 468.8
Bma03g00839 . 1510 1896 FH2 protein (formin) Gene Family AT5G07770 61.3 1.2e-117 420.6
Bma02g00008 . 893 1300 FH2 protein (formin) Gene Family AT5G07770 54.0 2.5e-110 396.4
Bma04g00272 . 586 924 FH2 protein (formin) Gene Family AT5G07770 55.3 7.2e-102 368.2
Bma02g00009 . 807 1195 FH2 protein (formin) Gene Family AT5G07770 51.0 5.7e-99 358.6
Bma02g00008 . 858 1289 FH2 protein (formin) Gene Family AT3G32400 67.8 1.2e-155 546.6
Bma02g00009 . 772 1188 FH2 protein (formin) Gene Family AT3G32400 63.8 2.4e-143 505.8
Bma06g00166 CCT 700 1109 FH2 protein (formin) Gene Family AT3G32400 62.2 4.6e-134 474.9
Bma03g00839 . 1497 1913 FH2 protein (formin) Gene Family AT3G32400 56.9 7.6e-121 431.0
Bma04g00272 . 586 931 FH2 protein (formin) Gene Family AT3G32400 52.8 4.6e-102 368.6
Bma02g00008 . 1 1289 FH2 protein (formin) Gene Family AT2G25050 52.2 2.7e-310 1061.6
Bma02g00009 . 1 1188 FH2 protein (formin) Gene Family AT2G25050 52.0 6.1e-278 954.1
Bma04g00272 . 586 931 FH2 protein (formin) Gene Family AT2G25050 51.4 5.8e-103 372.9
Bma06g00166 CCT 713 1109 FH2 protein (formin) Gene Family AT5G07780 60.1 1.4e-116 416.8
Bma03g00839 . 1511 1901 FH2 protein (formin) Gene Family AT5G07780 55.8 1.5e-102 370.2
Bma02g00008 . 894 1282 FH2 protein (formin) Gene Family AT5G07780 51.4 1.8e-95 346.7
Bma04g00272 . 587 931 FH2 protein (formin) Gene Family AT5G07780 50.9 3.9e-87 318.9
Bma04g00272 . 559 938 FH2 protein (formin) Gene Family AT5G07740 66.5 6.1e-143 506.1
Bma06g00166 CCT 787 1109 FH2 protein (formin) Gene Family AT5G07760 70.7 1.0e-120 431.4
Bma03g00839 . 1605 1901 FH2 protein (formin) Gene Family AT5G07760 68.5 3.2e-106 383.3
Bma02g00008 . 968 1282 FH2 protein (formin) Gene Family AT5G07760 61.6 6.2e-102 369.0
Bma04g00272 . 661 931 FH2 protein (formin) Gene Family AT5G07760 59.4 2.2e-91 334.0
Bma02g00009 . 882 1181 FH2 protein (formin) Gene Family AT5G07760 57.7 3.2e-90 330.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00009 Bma_Chr02 FPKM 14.118718 17.26343 7.789331 6.93615 76.786484 77.357063 77.401825 2.961452 3.826178 3.581743