Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00013 GCGCAGCCGTCTCACAAGACCTTCAGAATCAAGAAGAAACTTGCCAAGAAGATGAGGCAGAACAGGCCGATCCCCTACTGGATCCGCATGAGGACCGACAACACTATCAGGTACAATGCGAAGCGCAGGCACTGGCGTCGCACTAAACTAGGATTTTGA 159 52.2 AQPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 52
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 246245 246514 + Bma014471.1 Bma02g00013 77263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00013 52 ProSitePatterns Ribosomal protein L39e signature. 31 47 IPR020083 GO:0003735|GO:0005840|GO:0006412
Bma02g00013 52 Gene3D Ribosomal protein L39e 3 52 IPR023626 -
Bma02g00013 52 Pfam Ribosomal L39 protein 10 50 IPR000077 GO:0003735|GO:0005840|GO:0006412
Bma02g00013 52 PANTHER - 2 52 - -
Bma02g00013 52 PANTHER RIBOSOMAL PROTEIN L39E 2 52 - -
Bma02g00013 52 SUPERFAMILY Ribosomal protein L39e 4 51 IPR023626 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00013 K02924 RP-L39e, RPL39; large subunit ribosomal protein L39e - gmx:100807176 110.923
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00013 Bma-Chr2:246245 Bma11g00631 Bma-Chr11:10826492 9.61E-30 dispersed
Bma02g00013 Bma-Chr2:246245 Bma07g00746 Bma-Chr7:20198250 2.60E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g533 . . . . . . . . . . . . . . Sed05g1725 . . Bhi04g00035 Tan02g2750 Cmetu01g0581 . Hepe10g0228 . Lcy13g1815 . . . . . . . . . . . . . . . Blo17g00008 . . . . . . Bma02g00013 . . . . . . . . . Bhi09g02973 . . . . Mch11g0521 . . . . . . . . . . . Cme07g00102
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002071 1 4 2 3 2 0 5 1 0 0 2 0 3 3 2 3 0 3 3 0 2 1 1 1 1 2 4 3 2 3 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00013 Bma_Chr02 FPKM 34.939159 38.384441 31.967981 34.495518 32.113781 34.690811 32.202442 48.399189 47.690052 43.762486