Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00024 ATGAAAACTTACACTTTCCTTTGTTTGGGGACTCTTGGAGAATTGCTTATTCTCCTTCTTTACCGCCCTTGCTCCGCCAGCACTCTACATAAGGGCAATATTTATCCGGGCTTTCAAGGGGCTCAAATGACTTTCATCGATCGCGACGGCATTTTTCTTTATTCCAACTCTTCTGAATTCGCTTTTGGCTTCTTCACTATTGCGCCAGATGATGTCACCAGGTTTACTCTCTCCGTCAACCACCAGAGCAGCCAAAGAATTGTGTGGTCTGCCAACAGGGACTCCCCAGTTTCGAATTCTGATAAATTTGTGTTCGATGATAAGGGTAATGTTTTCCTACAAAGCGCCGGAAACGTTGTTTGGTCCACTGACACCGGCGGTAAAGGAGTTGCTACCATGGCGTTGCAGGACTCGGGAAATTTAGCTTTGATCGGAGACAACGGTGTTGTGATTTGGCAAAGTTTTAGCCATCCAACAGACACCCTTCTGTCAAACCAGGATTTTTCTCAAGGAATGAGACTTGTAAGCGACCGAGATTCAAAGAACAATTTGACTTATTTTCTTGAAATAAAGTCCGGCGACATAGTGCTATCTGCAGGTTTCTCAATTCCCCAGACTTACTGGTCTATGAGTAAGGAGAATCGTAAAACCGTTAACAAAGATGGCGGGTTCGTTTCTTCGGCATCTCTGGATGCAAATTCATGGCGCATATATAGCGAAAATGGCCAAAACAAAGTCTTGCTCTGGCAATTCATCTTCTCCAACGCCAAGTCTACAAACACCACTTCTATGGCGGTCTTAGACAAAACTGGGTTGCTTACTTTCCATCTTCTTCCCCAAGGAGGGACTAGTATAGATTCACCCAAGAAAATACCCGAAGATCAATGCAGCACGCCCTTATTTTGTGGATCTTATTTTGTGTGTTATACGGGACCCAGATGCGATTGTCTCTCTATTCTCCACTCCTACTCCCAACCAAACTGCCAGACCGGGACTGTTTCTTTCTGTAATTCATCGCAGAATGATACGAAGCTCGTGGATGCTGGGAGTGGGCTCAGTTACTTTGCTCTCGAATTTCTTCGGCCCTTTGAAACAGATTTGAATGGATGCAAATCCTCTTGTAATTCAAACTGCTCCTGCCTTGCTTTGTTCTTCCAGAGCAGTTCTGGAAGTTGTTTCTTGCTTGACAGAATAGATAGCTTTCAGAGCTCTGACAGTGAGTCTGATTATGTCTCGTTTGTCAAGGTGTTGAGTGAAGGAGCAAGTAAAGAGAAGAATGGAGGGGATAACGGAGGGAATGAAAATGGCCGAAAACCCTTCCCAATTGTTGTTGTGATTATTGTTGTTTCTACAGTTGTTGTCATTACTGGTTTACTCTACGTCAGTTACCACTACTACGTGAAGAAGAAAAGGCAGAAATTGCCTGAATCTCCCCATGCAAATTCAGAAGATGATAAATTCTTTGAGGGTTTATCAGGGATGCCGATTCGATTCACCTTCAAAGATCTTCAAGATGCAACCAACAATTTCTGTGTCAAGCTGGGGCAAGGAGGGTTCGGATCAGTTTACAGAGGAGATTTACCGGATGGGTCTCGACTGGCGGTGAAGAAGCTAGAAGGCATTGGACAGGGGAAGAAAGAATTCCGGGCCGAAGTCAGCATAATCGGAAGCATCCATCACCTTCACTTGGTCCGGCTCAAGGGCTTCTGCGCAGAGGGAAACCATCGTCTTCTTGCTTACGAATTCATGGCTAATGGATCCTTAGATAAATGGATATTCAGGAAGAAGAAAGAGAATTTTCTGTTAGATTGGGACACAAGATTCAATATAGCTCTAGGAACAGCAAAAGGACTTGCTTATCTTCATGAAGACTGCGATTCAAAGATAATTCACTGTGATATCAAACCAGAAAACGTTCTTCTAGATGCTAATTATTTGGCCAAAGTTTCTGATTTCGGTCTGGCCAAGCTCATGACTCGAGAGCAGAGCCATGTTTTTACGACAATGAGAGGCACGAGAGGGTACCTTGCCCCGGAATGGATCACAAACTATGCTATATCAGAGAAGAGCGATGTGTATAGCTACGGAATGGTACTTCTGGAGATAATTGGGGGAAGGAAGAGCTACGATCCTTCTGAAACTTCAGAGAGGGCCCATTTTCCTTCTTATGCATTCAAGATGCTGGAAGAAGGAAAATTACGAGACATTCTTGATTCGAACCTCGCCATTAACGAAGCAGACGAGAGGGTTTCGATTGCCATTAAGGTTGCATTGTGGTGCATTCAAGAAGACATGTCTCTGAGGCCCCCCATGACGAAAGTCGTTCAAATGCTGGAAAGAGTCTCAGCAGTTCCGAACCCTCCGACCCTGTCTCCGCTGGGTTCTCGCCTGTATGCCAACTTTTTCAAATCGATAAGCGAGGAGGGAACTTCTTCGGGGCCATCGGACTGCAACAGCGATGCCTATTTGACCGCTGTGCGCCTTTCTGGGCCAAGATAG 2499 45.02 MKTYTFLCLGTLGELLILLLYRPCSASTLHKGNIYPGFQGAQMTFIDRDGIFLYSNSSEFAFGFFTIAPDDVTRFTLSVNHQSSQRIVWSANRDSPVSNSDKFVFDDKGNVFLQSAGNVVWSTDTGGKGVATMALQDSGNLALIGDNGVVIWQSFSHPTDTLLSNQDFSQGMRLVSDRDSKNNLTYFLEIKSGDIVLSAGFSIPQTYWSMSKENRKTVNKDGGFVSSASLDANSWRIYSENGQNKVLLWQFIFSNAKSTNTTSMAVLDKTGLLTFHLLPQGGTSIDSPKKIPEDQCSTPLFCGSYFVCYTGPRCDCLSILHSYSQPNCQTGTVSFCNSSQNDTKLVDAGSGLSYFALEFLRPFETDLNGCKSSCNSNCSCLALFFQSSSGSCFLLDRIDSFQSSDSESDYVSFVKVLSEGASKEKNGGDNGGNENGRKPFPIVVVIIVVSTVVVITGLLYVSYHYYVKKKRQKLPESPHANSEDDKFFEGLSGMPIRFTFKDLQDATNNFCVKLGQGGFGSVYRGDLPDGSRLAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCAEGNHRLLAYEFMANGSLDKWIFRKKKENFLLDWDTRFNIALGTAKGLAYLHEDCDSKIIHCDIKPENVLLDANYLAKVSDFGLAKLMTREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKSYDPSETSERAHFPSYAFKMLEEGKLRDILDSNLAINEADERVSIAIKVALWCIQEDMSLRPPMTKVVQMLERVSAVPNPPTLSPLGSRLYANFFKSISEEGTSSGPSDCNSDAYLTAVRLSGPR 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 300233 302731 + Bma014480.1 Bma02g00024 77274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00024 832 PIRSF SRK 8 829 IPR024171 GO:0004674
Bma02g00024 832 Gene3D - 46 157 IPR036426 -
Bma02g00024 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Bma02g00024 832 Coils Coil 832 832 - -
Bma02g00024 832 Pfam D-mannose binding lectin 87 169 IPR001480 -
Bma02g00024 832 Gene3D Phosphorylase Kinase; domain 1 473 582 - -
Bma02g00024 832 CDD B_lectin 44 158 IPR001480 -
Bma02g00024 832 SUPERFAMILY Protein kinase-like (PK-like) 491 779 IPR011009 -
Bma02g00024 832 ProSiteProfiles Protein kinase domain profile. 508 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00024 832 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 15 832 - -
Bma02g00024 832 CDD STKc_IRAK 514 780 - -
Bma02g00024 832 ProSitePatterns Protein kinases ATP-binding region signature. 514 537 IPR017441 GO:0005524
Bma02g00024 832 Gene3D Transferase(Phosphotransferase) domain 1 583 786 - -
Bma02g00024 832 Pfam Protein kinase domain 512 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00024 832 SMART serkin_6 508 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma02g00024 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 176 IPR036426 -
Bma02g00024 832 ProSiteProfiles Bulb-type lectin domain profile. 38 156 IPR001480 -
Bma02g00024 832 SMART blect_4 44 158 IPR001480 -
Bma02g00024 832 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 15 832 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00024 - - - zju:107421173 1112.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01276 Bma02g00024 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00024 Bma-Chr2:300233 Bma08g00603 Bma-Chr8:38037157 6.11E-126 dispersed
Bma04g01596 Bma-Chr4:51878114 Bma02g00024 Bma-Chr2:300233 1.32E-18 dispersed
Bma02g00001 Bma-Chr2:82536 Bma02g00024 Bma-Chr2:300233 2.68E-171 transposed
Bma05g01384 Bma-Chr5:53258708 Bma02g00024 Bma-Chr2:300233 1.05E-146 transposed
Bma15g00414 Bma-Chr15:4485104 Bma02g00024 Bma-Chr2:300233 4.62E-174 transposed
Bma01g01276 Bma-Chr1:17288525 Bma02g00024 Bma-Chr2:300233 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66323 PF00069 Pkinase 1.30E-48 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00024 Bma_Chr02 FPKM 17.086449 19.670185 2.865509 1.692282 1.368188 1.819472 1.389184 1.616036 1.484633 1.642995