Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00025 AGAACGGGAACGAGTGCTGATTTGCGAATCAGGGAAAAGGTCAGGGAGGTCGTGTCCAAGGGTAAGGCTGCTGGTATTCTGCGTCTGGTATTTCACGACGCAGGAACTTTTGATATGGACGAAAATTCAGGCGGCATGAATGGTTCTATTGTTTATGAGCTTGATAGACCTGAAAATACTGGTCTCAAAAAATCTTTGAAGGTGAGTTGTCTCTCTTTGTGCTCTCCCTCTCGTTCGTGGGCAGATATGATTGCTGTCGCCGGTGCAGAAGCGGTTTCAATCTGTGGAGGTCCAAATATCCCTGTTGGCTTAGGGAGATTAGATTCATTGAAGGATGATCCTGAAGGGAGACTTCCTCTAGAGTCTCTGGATGCTCTGGGTTTGAAGCAATGCTTCCTTAAGAAAGGATTTTCAACTCGGGAACTCGTTGCTCTATCGGGAGCCCATACTATTGGGAGCAAGGGATTTGGAAATCCAACAGTTTTTGATAATTCATACTTTCGGATTCTTCTGGAGAAGCCGTGGAAGTCTTCAGCTGGTGGGATGACGAGCATGATCGGACTTCCTTCCGACCGTGCTCTTGCCGAGGACGAAGAATGCATGAGATGGATCAAAAACTATGCACAGAATCAGAAGACGTTCTTTGAAGATTTCAAGAATGCTTATATCAAGCTAGTGAATTCTGGTGCTGTGTGGAAAAGCCTGTGA 708 45.9 RTGTSADLRIREKVREVVSKGKAAGILRLVFHDAGTFDMDENSGGMNGSIVYELDRPENTGLKKSLKVSCLSLCSPSRSWADMIAVAGAEAVSICGGPNIPVGLGRLDSLKDDPEGRLPLESLDALGLKQCFLKKGFSTRELVALSGAHTIGSKGFGNPTVFDNSYFRILLEKPWKSSAGGMTSMIGLPSDRALAEDEECMRWIKNYAQNQKTFFEDFKNAYIKLVNSGAVWKSL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 303890 305307 + Bma014481.1 Bma02g00025 77275

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00025 235 Gene3D - 11 229 - -
Bma02g00025 235 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 10 233 IPR044831 GO:0004601|GO:0034599
Bma02g00025 235 SUPERFAMILY Heme-dependent peroxidases 12 229 IPR010255 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Haem peroxidase superfamily signature 23 37 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Haem peroxidase superfamily signature 96 108 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Haem peroxidase superfamily signature 78 95 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Haem peroxidase superfamily signature 141 156 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 ProSitePatterns Peroxidases active site signature. 23 34 IPR019794 GO:0004601
Bma02g00025 235 ProSitePatterns Peroxidases proximal heme-ligand signature. 141 151 IPR019793 -
Bma02g00025 235 ProSiteProfiles Plant heme peroxidase family profile. 23 235 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 10 233 - -
Bma02g00025 235 Gene3D Peroxidase, domain 2 119 222 - -
Bma02g00025 235 Pfam Peroxidase 12 210 IPR002016 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Plant ascorbate peroxidase signature 77 95 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Plant ascorbate peroxidase signature 206 230 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Plant ascorbate peroxidase signature 23 38 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Plant ascorbate peroxidase signature 41 51 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Plant ascorbate peroxidase signature 135 156 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Plant ascorbate peroxidase signature 117 134 IPR002207 GO:0004601|GO:0006979|GO:0020037
Bma02g00025 235 PRINTS Plant ascorbate peroxidase signature 96 108 IPR002207 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00025 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - vvi:100247405 351.673
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00025 Bma-Chr2:303890 Bma03g00605 Bma-Chr3:4987954 3.02E-35 dispersed
Bma02g00025 Bma-Chr2:303890 Bma11g00146 Bma-Chr11:1311771 2.14E-31 transposed
Bma02g00025 Bma-Chr2:303890 Bma01g00808 Bma-Chr1:7550929 3.19E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g484 . . . . . . . . . Cmo12g00288 . . . Car12g00320 . Cpe07g00297 . Bhi04g00949 Tan02g2724 . . Hepe10g0250 . . . . . . . . . . . Cone17ag1019 . . . . Cme03g01615 Blo17g00021 . . Bda13g01263 Bpe14g00580 . . Bma02g00025 . . . . Cma12g00339 . . . . . . . . . . . Cla08g01335 Cam08g1797 Cec08g1376 Cco08g1504 Clacu08g1491 . Cre08g1278 Lsi08g01206 . Chy03g01119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007203 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00025 Bma_Chr02 FPKM 0.413462 0.0 5.85768 4.473452 1.847706 2.498049 2.30242 0.171655 0.0 0.0