Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00027 ATGGGAGAGACGAGGGACGCCGAGTACGAGGACGAGCTTGTCGACTACGAAGATGAGGAATACAAGGCATCCGACGCTGTTGGAGTCAAAGTTAACGGCGAAGCGCCAAAGAAGGGTTATGTTGGCATTCATAGTTCGGGATTCAGAGACTTTCTTTTGAAGCCAGAGCTTCTTCGTGCTATTGTGGACTCGGGATTTGAGCATCCTTCCGAAGGCAAACTTTCTACTCTTTTGTTACATTTTACTCACCCACGGTTCATTTCCTTCGATGGATTTTTTACTTCTTCATCAGTGCAACATGAATGTATTCCCCAAGCTATTCTAGGAATGGATGTACTTTGTCAAGCTAAATCTGGTATGGGAAAAACTGCTGTTTTTGTATTATCCGTCTTGCAGCAAATTGACCCTGTGGCCGGTCAAGTTTCTGCCCTTGTTCTTTGTCATACAAGAGAACTAGCATACCAGATTTGCCATGAGTTCGAGAGGTTCAGTTCTTACTTGTCGGATCTCAAAGTGTCGGTATTCTATGGCGGTGTCAATATTCGAATTCACAAAGATCTACTGAAGAATGAATGCCCTCATATTGTTGTTGGAACTCCTGGAAGAATATTGGCTTTAGCGAGAGAAAAGGATCTTTCTCTTAAGAATGTTAGGCATTTTATCTTAGATGAATGTGACAAGATGCTCGAATCACTTGACATGAGGAGGGACGTGCAGGAGATTTTCAAGATGACCCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTAAGCAAAGAAATTCGCCCAGTCTGCCATAAATTTATGCAAGATCCAATGGAAATATATGTGGATGACGAGGCAAAGCTGACCCTGCATGGTCTTGTGCAGCACTACATCAAATTGGCTGAAGCTGAGAAAAATCGCAAGTTGAATGACCTTCTCGATGCGCTGGACTTCAATCAAGTGGTCATATTCGTCAAAAGTGTGAGCAGAGCAGCTCAGTTGGACAAGTTATTAGTCGAATGTAATTTTCCCTCTATATGCATTCACTCTGGCATGTCTCAGGAAGAAAGGTTGACGCGTTACAAAGGATTCAAGGAGGGACATAAGAGGATTCTTGTGGCTACAGATTTGGTTGGCCGTGGTATTGACATTGAACGTGTGAACATAGTTATCAACTATGATATGCCTGATTCTGCTGATACTTATCTACACAGGGTTGGTAGAGCTGGAAGGTTTGGTACTAAAGGGCTTGCCATTACTTTTGTTTCATCTGCTGCAGACACTGACGTTCTCAATAACGTTCAAGAAAGGTTTGCTGTGAACATAATGGAACTTCCTGAGCAGATTGATACCTCTACTTACAGTATGTGCTTATTTTTATCTTTAGATTATAAGTTTGTGTAG 1392 42.17 MGETRDAEYEDELVDYEDEEYKASDAVGVKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGKLSTLLLHFTHPRFISFDGFFTSSSVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSVLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSSYLSDLKVSVFYGGVNIRIHKDLLKNECPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCHKFMQDPMEIYVDDEAKLTLHGLVQHYIKLAEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAQLDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADTDVLNNVQERFAVNIMELPEQIDTSTYSMCLFLSLDYKFV 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 313407 316877 + Bma014483.2 Bma02g00027 77277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00027 463 SMART ultradead3 91 292 IPR014001 -
Bma02g00027 463 Pfam DEAD/DEAH box helicase 97 262 IPR011545 GO:0003676|GO:0005524
Bma02g00027 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 420 IPR027417 -
Bma02g00027 463 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 304 449 IPR001650 -
Bma02g00027 463 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 27 448 - -
Bma02g00027 463 CDD SF2_C_DEAD 289 418 - -
Bma02g00027 463 Pfam Helicase conserved C-terminal domain 302 409 IPR001650 -
Bma02g00027 463 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 448 - -
Bma02g00027 463 SMART helicmild6 328 409 IPR001650 -
Bma02g00027 463 CDD DEADc_DDX39 45 278 - -
Bma02g00027 463 Gene3D - 42 284 IPR027417 -
Bma02g00027 463 Gene3D - 285 453 IPR027417 -
Bma02g00027 463 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 276 IPR014001 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma01g01279 Bma02g00027 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00027 Bma-Chr2:313407 Bma02g01063 Bma-Chr2:52225895 1.13E-76 dispersed
Bma01g01279 Bma-Chr1:17310403 Bma02g00027 Bma-Chr2:313407 0 transposed
Bma11g00823 Bma-Chr11:25648476 Bma02g00027 Bma-Chr2:313407 0 transposed
Bma01g01278 Bma-Chr1:17309342 Bma02g00027 Bma-Chr2:313407 1.27E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00027 K12812 - csv:101217346 775.007