Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00036 ACACTTAATGTTCATGTATCGCCACAAAACAGGTTAGATGTGTATATTCATGATTATCTAGTGAAGAGAGATTTAAAAGCCACTGCTCAGGCGTTTCAAGCAGAAGGGAAAGTATCTTCAGATCCTGTTGCCATTGATGCGCCTGGAGGTTTTCTCTTTGAATGGTGGTCGGTTTTCTGGGATATATTCATTGCTAGAACTAATGAGAAGCACTCTGAGGTTGCTGCATCATATATCGAGACACAGTTAATTAAAGCAAGGGAACAACAACAGCAGCAGCAGCAACAACAACACCCACAGCTCCAACAACCTCAACAATCACAACATCAGCAGCAGCAACAACACATGCAAATGCAGCAGCACCTGTTGCAGAGACAGCAACAACAACAGCAGCAGCAGCAGCAGCAACAACAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAACAAACACAGGCCCAACAACAGCAGCGAAGAGATGGAGCTCACCTCTTAAATGGAAATTCTAATGGGCTTGTGGGAAATGAACCTCTTTTGCGACAAACCCCTGGAACTGCAAATGCTTTGGCTGCAAAGATGTATGAAGAAAGACTAAAATTGCCTACTCAGAGAGATGCTCTGGATGATGCGACTATAAAGCAACGATATGGTGAGAGTGTTGGGCAGCTGTCAGATCCAAATCACGCTTCAGTGCTCAAGGCAACTGCAGCAAGTGGGCAGGCATCAGGTCAAGTCTTACATGGGGCTGCTGGGACAATGTCTCCTCAGGTTCAAGCCAGGGGTCAGCAATTGCCAGGTTCCACTCCGGACATAAAAAGCGAGATCAATCCAGTGCTGAATCCAAGAGCAGCGGGTCCAGAGGGATCAATGATGGGTATTCCTGGATCTAACCATGGGGGCAATAATTTGACTTTGAAAGGATGGCCTCTTACGGGGTTGGATCAGCTTCGTTCTGGGCTTCTTCAGCAACAAAAATCTTTTATACAATCTCCTCAGCCATTTCACCAGATCCAGATGTTGGCTCCACAACAGCAACAGTTCATGCTTGCACAGCAAAATTTAACTTCCCCATCTGCAAGTGATGAAAGTAGAAGATTGAGAATGCTAGTGAACAGTAGGAATATGGGACTTGCAAAGGATGGGCTGTCAAATTCTGTTGGTGATGTGGTTGCCAATGTGGGCTCTCCGCTCCAACCTGGTGGCCCTCTTTTGCCTCGTGGAGACACAGATGTTCTCTATAAGTTAAAAATGGCTCAAATACAACAGCAGCAGCAGCAACAGACCAATAACCCTCAGCAGCAACAACTTCAACAACAACATGTTCTTTCTGGTCAGCAATCGCAAAGTTCAAGTTTCAATATCCACCAGCAAGATAGTAAAATGGGTGGTGCTGGCAGTGTAAACATGGATGGAAACATGTCAAACTCCTTTCGAGGAACTGATCAGGTTTCAAAAAACCAGACTGTGAGAAAAAGAAAGCAGCCAGTGTCATCTTCAGGTCCTGCCAATAGCTCAGGAACAGCAAACACTGCTGGCCCTTCCCCAAGTTCGGCACCGTCAACGCCTTCAACACATACCCCTGGAGATGTGATCTCCATGCCATTGCCTCACAGTGGTGGTTCTTCCAAGCCGTTGATGTTGGGAGCTGACGGTTCCGGCACTTTTACATCACCATCGAATCAATTGTGGGATGATAAAGATCTTGAATTGCAGGCTGACATGGATCGGTTTGTAGAAGATGGATCTCTTGATGATAATGTTGAGTCTTTTTTATCCCACGACGATACAGATCCTAGAGACCCAGTTGGCCGAGATGTGAGCAAAGGTTTTTCATTTATTGAAATTAATTCGGTAAGAGCCAGCTCAAGTAAAGTTTCCTGTTGCCACTTTTCGTCTGATGGAAAATTGCTTGCTAGTGGTGGTCATGACAAAAAGGCAGTACTATGGCACACAGAAAATTTAAAGCCAAAGACTTCGCTCGAAGAACACTCATCCATTATTACAGATGTTCGTTTCAGTCCGAGCATGCCTCGTCTTGCCACTTCTTCATTTGATAGAACTGTCAGGGTCTGGGATGCTGACAATCCTTGTTACTCTCTTAGGACTTTTACTGGACATTCGGGTGGCACGGGGCAGATGAGATTTCAGCCCCATCTTGGTCGGTTTCTTGCTTCTGCTGTTGATAAAATTGTATCTATTCTAGACGTGGAGGCACAAGTCAGTCGCCATTCTTTGCAGGGACATTCGAATACAGTCCATTCAGTCTCGTGGGATCCTTCAGGCGAGTTTCTCGCCTCAGTTAGCGAGGATTCAGTCAGGGTTTGGTCATTTGGCTCGGGATCCGAAGGAGAGTGCATTCATGAGTTAAACTGTAATGGCAATAAATTCCAATCCTGTGTTTTCCACCCAAAATTTCCTTCACTACTTTCCATGGAGCTATGGAACATGTCCGAGAGTAAAACAATGACTCTTTCTGCTCACGACGGATTGATTTCTTCGCTAGCTGTGTCAACCGTGACTGGTTTTGTTGCTTCCGCCAGCCACGACAAGTTTGTCAAGCTATGGAAGTAG 2571 45.82 TLNVHVSPQNRLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQHPQLQQPQQSQHQQQQQHMQMQQHLLQRQQQQQQQQQQQQQQQQQQQQQQQQQTQAQQQQRRDGAHLLNGNSNGLVGNEPLLRQTPGTANALAAKMYEERLKLPTQRDALDDATIKQRYGESVGQLSDPNHASVLKATAASGQASGQVLHGAAGTMSPQVQARGQQLPGSTPDIKSEINPVLNPRAAGPEGSMMGIPGSNHGGNNLTLKGWPLTGLDQLRSGLLQQQKSFIQSPQPFHQIQMLAPQQQQFMLAQQNLTSPSASDESRRLRMLVNSRNMGLAKDGLSNSVGDVVANVGSPLQPGGPLLPRGDTDVLYKLKMAQIQQQQQQQTNNPQQQQLQQQHVLSGQQSQSSSFNIHQQDSKMGGAGSVNMDGNMSNSFRGTDQVSKNQTVRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPLPHSGGSSKPLMLGADGSGTFTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESFLSHDDTDPRDPVGRDVSKGFSFIEINSVRASSSKVSCCHFSSDGKLLASGGHDKKAVLWHTENLKPKTSLEEHSSIITDVRFSPSMPRLATSSFDRTVRVWDADNPCYSLRTFTGHSGGTGQMRFQPHLGRFLASAVDKIVSILDVEAQVSRHSLQGHSNTVHSVSWDPSGEFLASVSEDSVRVWSFGSGSEGECIHELNCNGNKFQSCVFHPKFPSLLSMELWNMSESKTMTLSAHDGLISSLAVSTVTGFVASASHDKFVKLWK 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 363492 369334 + Bma014492.2 Bma02g00036 77286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00036 856 MobiDBLite consensus disorder prediction 422 561 - -
Bma02g00036 856 ProSiteProfiles Trp-Asp (WD) repeats profile. 745 785 IPR001680 GO:0005515
Bma02g00036 856 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 745 776 - -
Bma02g00036 856 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 708 856 - -
Bma02g00036 856 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 10 707 - -
Bma02g00036 856 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 695 IPR001680 GO:0005515
Bma02g00036 856 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 824 856 - -
Bma02g00036 856 MobiDBLite consensus disorder prediction 422 528 - -
Bma02g00036 856 MobiDBLite consensus disorder prediction 151 180 - -
Bma02g00036 856 Pfam WD domain, G-beta repeat 743 776 IPR001680 GO:0005515
Bma02g00036 856 Pfam WD domain, G-beta repeat 820 856 IPR001680 GO:0005515
Bma02g00036 856 Pfam WD domain, G-beta repeat 620 649 IPR001680 GO:0005515
Bma02g00036 856 Pfam WD domain, G-beta repeat 656 692 IPR001680 GO:0005515
Bma02g00036 856 SMART Lish 8 40 IPR006594 GO:0005515
Bma02g00036 856 Pfam LisH 11 36 IPR006594 GO:0005515
Bma02g00036 856 MobiDBLite consensus disorder prediction 90 119 - -
Bma02g00036 856 CDD WD40 614 856 - -
Bma02g00036 856 SUPERFAMILY WD40 repeat-like 613 855 IPR036322 GO:0005515
Bma02g00036 856 ProSiteProfiles Trp-Asp (WD) repeats profile. 824 856 IPR001680 GO:0005515
Bma02g00036 856 Coils Coil 116 159 - -
Bma02g00036 856 ProSitePatterns Trp-Asp (WD) repeats signature. 679 693 IPR019775 -
Bma02g00036 856 Gene3D - 604 721 IPR015943 GO:0005515
Bma02g00036 856 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 695 - -
Bma02g00036 856 ProSiteProfiles Trp-Asp (WD) repeats profile. 618 659 IPR001680 GO:0005515
Bma02g00036 856 SMART WD40_4 817 856 IPR001680 GO:0005515
Bma02g00036 856 SMART WD40_4 653 692 IPR001680 GO:0005515
Bma02g00036 856 SMART WD40_4 738 776 IPR001680 GO:0005515
Bma02g00036 856 SMART WD40_4 611 650 IPR001680 GO:0005515
Bma02g00036 856 SMART WD40_4 696 735 IPR001680 GO:0005515
Bma02g00036 856 Gene3D - 722 813 IPR015943 GO:0005515
Bma02g00036 856 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 708 856 IPR044716 GO:0003714
Bma02g00036 856 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 10 707 IPR044716 GO:0003714
Bma02g00036 856 Gene3D - 814 856 IPR015943 GO:0005515
Bma02g00036 856 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00036 - - - pvy:116133053 1067.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00036 Bma-Chr2:363492 Bma06g01309 Bma-Chr6:50092764 2.52E-36 dispersed
Bma13g00706 Bma-Chr13:20777992 Bma02g00036 Bma-Chr2:363492 6.24E-17 transposed
Bma01g02168 Bma-Chr1:78617039 Bma02g00036 Bma-Chr2:363492 2.68E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g425 . . . . . . . . . . . . . . . Cpe07g00268 . Bhi04g01023 . . . . . . . . . . . . . . . . . . . . . . . . Bda13g01277 . . . Bma02g00036 . . . . . . . . . . . . . . . . Cla08g01295 Cam08g1754 Cec08g1334 Cco08g1458 Clacu08g1451 . Cre08g1238 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56838 PF00400 WD40 0.013 CL0186 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00036 Bma_Chr02 FPKM 9.001235 10.635993 297.612091 300.020752 2771.832764 2438.973389 2558.943604 20.607513 19.37639 18.341455