Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00041 CATATTGTTGATATATCGGATACTGTTGATACTTCATCATCAAGCTTAGCTCATGGTAGACTATACACTGGGTCAAATGCTTCACATATTGAAGATCGGTCTTCAAGCATTACCCGAGTTCCTACTTCTCAACCTTCAGTTGTATCTAATGGATCTAACTCAAGAAATTCCTCGTTCATTCGAAGAGGGGACACACGTCGCCGTCGGAGTCCACTGAATTCCAAATTATGGATATCTATTGAACTCGTTATTACTTTAAGTCAGATTGTTGCAGCTGTAGTTGTTTTGTCACTTTCAAGGCAGGAGCATCCGCGTGCCCCATTGTTTGAGTGGATTGTGGGATATGCATCTGGTTGTGTTGCTACCCTCCCTCTTCTCTACTGGCGCTATAGACATCATAATCAGACTTCAGAGCAAGATTCATCTCAATCCCGTCAGAGTTCTAGTCAAGTTTCTCTTTCTGCTTCTAGGACATCAGAAGGGGAAGATCGACAAACCACTGTATCTCCTCCTAGAAGCAATCAAGGTTCTGGTGTACCAAGTCTGAGGCTGAAGATATTGGTAGAATATTTTAAGATGGGCTTGGATTGTTTTTTTGCCGTTTGGTTTGTAGTTGGCAATGTGTGGATCTTTGGTGGGCATTCATCAGCCTCTGAGTCTCCTAACTTGTACAGGTTATGTATAGTTTTTCTTACCTTTAGCTGTATTGGATATGCCATGCCCTTCATTCTATGTGTGACCATCTGCTGCTGTCTGCCGTGTATAATTTCCATCCTTGGGTTTCGAGAAGATCTGTCACAAACTAGGGGTGCCACTGCCGAATCAATTAATTCTTTGCCTACATACAAGTTTAAAATGAAGAGAAGTAGAAGTGCGGATGAAAGTAGCTTGGGTGTTTTTGAAGGTGGGGTTGTGGCTGCTGGAACAGATAAGGAGCGTATGATTTCTGGAGAAGACGCTGTCTGTTGCATCTGCCTGGCTAAATACGCCAACAACGATGAATTAAGAGAGTTACCATGCACTCATTTTTTTCACAAGGATTGTGTGGATAAATGGCTGAAGATAAATGCCTTATGCCCCCTCTGCAAGATGGCCGCTGGTGAAAGCATCTTAGGCTCACTTGACGGCTCAAGCACTGACCACCAACGCGACGGCGAAACTAGGGTGGGGACGACCTTGACCCTGTTTTAA 1191 43.83 HIVDISDTVDTSSSSLAHGRLYTGSNASHIEDRSSSITRVPTSQPSVVSNGSNSRNSSFIRRGDTRRRRSPLNSKLWISIELVITLSQIVAAVVVLSLSRQEHPRAPLFEWIVGYASGCVATLPLLYWRYRHHNQTSEQDSSQSRQSSSQVSLSASRTSEGEDRQTTVSPPRSNQGSGVPSLRLKILVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASESPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLSQTRGATAESINSLPTYKFKMKRSRSADESSLGVFEGGVVAAGTDKERMISGEDAVCCICLAKYANNDELRELPCTHFFHKDCVDKWLKINALCPLCKMAAGESILGSLDGSSTDHQRDGETRVGTTLTLF 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 391580 393927 + Bma014497.1 Bma02g00041 77291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00041 396 MobiDBLite consensus disorder prediction 137 178 - -
Bma02g00041 396 ProSiteProfiles Zinc finger RING-type profile. 322 363 IPR001841 -
Bma02g00041 396 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 384 - -
Bma02g00041 396 MobiDBLite consensus disorder prediction 32 59 - -
Bma02g00041 396 MobiDBLite consensus disorder prediction 139 178 - -
Bma02g00041 396 SMART ring_2 322 362 IPR001841 -
Bma02g00041 396 MobiDBLite consensus disorder prediction 32 66 - -
Bma02g00041 396 SUPERFAMILY RING/U-box 315 366 - -
Bma02g00041 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 368 IPR013083 -
Bma02g00041 396 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 384 - -
Bma02g00041 396 Pfam Ring finger domain 322 363 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00041 Bma-Chr2:391580 Bma15g00389 Bma-Chr15:4321863 2.75E-134 dispersed
Bma03g00136 Bma-Chr3:1029584 Bma02g00041 Bma-Chr2:391580 9.56E-12 transposed
Bma01g01300 Bma-Chr1:17778344 Bma02g00041 Bma-Chr2:391580 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00041 - - csv:101211818 567.0