Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00056 ATGGATGAATATTCTGGAAAAAGGGCTACTGACGGACTCACGGCTAGAAAATCGTCTGGTCTGGTTCTGAAAGATACAGCCAAGTGTGGCTATCAAAGTTCCCAGGATTGTAGTAGGCTCAGTTGTAGTAGCAGATCAACCTCTTCAAAAGCTCCTACAGTGAGCTTTTTGGGGAAAACTAAGTCTACCAAAACTTCTTTGAATGGGAAAGAAATAGTTGGAAGTTCTTCGAGGACGACTTCTACAATTAGAAATTCCAAAAAGTCAATCCTTGAGAGTAGAAGAACACTGACTTCTCAATCTAGATCGGAAGCTCCTGAAAATGGCGGCATTGAGGATGAAAAAGACGGTTCCGACCCTGTCCCTCCCGGAAAAATTCGAAGAGGGCTTTATGCTCATTCTAAAAACCGTGATTTCATGGATGTTGGAAGCTCTAGTCCAGCATCAAACGCAGGATCTTCTGTTTCTACGGGAGCTACAAATTCGATCTCGGTCTCTGGGACTGGTCCAAATTGCTATGGTTTGAGAAACTTAAAATGCAATTCATTATCTGACCATATTCCATCAGGCTGTTCATCAAATAGAAATCACAATGGAACTAAGGGTATTGAGAAGAAGACAAATTCCGAAAGAGAAAGTAGCTCCATTTCTAGAGAAAAGAAGATGAATGGATCACTATCGGATGGACGGAATATCAACTGTGGCCATGGCCTCTCTATTTCTGACTCTAGGAGAACCAGAAGTACAGCACCTCAAACCCAAAATGGCGTGTCGTCAGCGCCGTCTAGGAGTTCAGTCAATGCGAATACTAGAACTAGGCTCTCCGTGGAACCATCGCATGAGTCCTCTGCCATGGGCCGCCCAATGACTCAACGGAACGTATCCATCATTGGAAATGCTCCAAGTTTGTCAGGACAATTCTCGACAGAACCGACTTCTAGGCGACCATTTTCCTCTAGGAGAGTAAGAAATAGTAATGGAAATAGCGTTAGACCTACCAGTCCTGTTGAACTCGGCTCAACTTTGTCTTTGGAAAACTTGCAACATTATGACATTGATGGAGTGGCTGAGGTATTGTTGGCACTTGAGAGGATTGAGCAAGATGAAGAGCTAACATATGAGCAATTAATGCTTCTCGAGACTAGACTATTCTTAAACGGCATAGCCTTCTATGATCAGCATAGAGACATGAGACTGGACATTGATGACATGTCCTATGAGGAACTGCTGGCTCTCGAAGAGAGAATGGGAAATGTCAGCACAGCACTGACAGAGGATGCGTTGTCTCGGTGTCTCACAGGAAGCATTTTCGACTCGAACAATTATGGAGTTAGACGCTGCAGTGGCGATAAAAATGATGAAGAATACGTAAATGGAGATGAAGTTGGTAGATTGGAATGTAAGCATTGGTTTCATGAAGGATGTATACAACAATGGCTGAGGCAGAAGAACTGGTGCCCCATCTGCAAAGCTTCGGCTGAGCTCCCCGGCCGGCCATCTCCACCTTCCTAG 1512 44.38 MDEYSGKRATDGLTARKSSGLVLKDTAKCGYQSSQDCSRLSCSSRSTSSKAPTVSFLGKTKSTKTSLNGKEIVGSSSRTTSTIRNSKKSILESRRTLTSQSRSEAPENGGIEDEKDGSDPVPPGKIRRGLYAHSKNRDFMDVGSSSPASNAGSSVSTGATNSISVSGTGPNCYGLRNLKCNSLSDHIPSGCSSNRNHNGTKGIEKKTNSERESSSISREKKMNGSLSDGRNINCGHGLSISDSRRTRSTAPQTQNGVSSAPSRSSVNANTRTRLSVEPSHESSAMGRPMTQRNVSIIGNAPSLSGQFSTEPTSRRPFSSRRVRNSNGNSVRPTSPVELGSTLSLENLQHYDIDGVAEVLLALERIEQDEELTYEQLMLLETRLFLNGIAFYDQHRDMRLDIDDMSYEELLALEERMGNVSTALTEDALSRCLTGSIFDSNNYGVRRCSGDKNDEEYVNGDEVGRLECKHWFHEGCIQQWLRQKNWCPICKASAELPGRPSPPS 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 478451 480404 - Bma014511.1 Bma02g00056 77306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00056 503 ProSiteProfiles Zinc finger RING-type profile. 447 490 IPR001841 -
Bma02g00056 503 MobiDBLite consensus disorder prediction 199 218 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 31 106 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 219 287 - -
Bma02g00056 503 Pfam Ring finger domain 455 490 IPR001841 -
Bma02g00056 503 MobiDBLite consensus disorder prediction 187 287 - -
Bma02g00056 503 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 494 - -
Bma02g00056 503 SUPERFAMILY RING/U-box 454 494 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 31 166 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 300 336 - -
Bma02g00056 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 495 IPR013083 -
Bma02g00056 503 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 494 IPR045191 GO:0061630
Bma02g00056 503 MobiDBLite consensus disorder prediction 139 166 - -
Bma02g00056 503 MobiDBLite consensus disorder prediction 107 122 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00056 - - - jre:109009571 391.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02125 Bma02g00056 CCT
Bma01g01312 Bma02g00056 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00056 Bma-Chr2:478451 Bma12g00439 Bma-Chr12:11073626 1.64E-26 dispersed
Bma01g01312 Bma-Chr1:17911667 Bma02g00056 Bma-Chr2:478451 0 wgd
Bma01g02122 Bma-Chr1:77636854 Bma02g00056 Bma-Chr2:478451 4.57E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g200 Blo01g01341 . Bda01g00701 . . . . Bma01g02125 . Cmo12g00245 . Cma05g00629 Car09g00453 Car12g00277 Sed01g1303 Cpe07g00253 Cpe06g00391 Bhi04g01083 Tan02g2620 Cmetu03g2117 . Hepe10g0318 . Lcy13g1351 . . . . . . . . Cone7ag1763 . . Lsi04g02195 Csa03g04405 Chy04g00296 . Blo17g00044 . . Bda13g01298 . . Bma01g01312 Bma02g00056 . . Cmo09g00517 . Cma12g00293 Car01g01191 . . . Bhi09g02366 Tan01g3734 . . . . . . . . . . . . . . Chy03g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00056 Bma_Chr02 FPKM 19.829924 23.100662 28.694996 26.25691 18.901531 17.416252 19.746277 62.216919 56.07708 57.24073