Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00060 ATGGCCTTGGAGCTCTTTGTCTCTCCGAAGATGGATAATATGGCGGCTTCACAGGAAACTGCATCGCAAGGACTGAAGAGAGCGGAGTACCTGATTCGCCTCTTTTCTGATCGCCAGCGACAACCTCAAAACTCTGATCACTCTGATTGTTCCGATCTCACAGACCTCGCAGTTTCCGACTTCAGGAAAGTCATCTCCCTTCTTAATCGGACTGGCCATGCTCGGTTCAGGCGCGGTCCGATCCAGTCGTCTCCTTCATCTTCTTCGTCTACCTCTTCAGCGTCCCTGGATCCACCTCAAGGCTTATCCTTAGCCCCTGGATTTCAATCTCCGGTCGCTCCTGCAGCGGCTGCGGCCCAGCCTCCACCTTCTGCCCCGGCTGGCTTCGTCCAATTTCCGACGCAGGGGATGACGCTCGACTTCAGAAAACCTAATAATTTGAACTCGAACCACCAAGAAAGCACGAATCTGGAGCTCAGCGTTTCATCCAGCTCCTTGTTCATGTCGTCGGCTCTTACTGGAGACGGCAGCGTATCTAATGGAAAACTTGGATCGTCAATCTTTTTGACTCCAGCGCCGGCATCCTCCGCCGGGGGTAAGCCCCCTCTGTCATCTGTCCCGTACAAGAAGAGATGTCGCGATCACTCGGACAACTTCTCCGCAAAGCCTCCAGCTCCACCTTTGATTAATCAAATACACAGGAAAAACCGCGTGAAGGAAACTATCAGAGTTCCGGCGATAAGCTCGAAAATCGCCGATATTCCAGCCGACGACTACTCGTGGAGAAAGTACGGTCAAAAGCCAATCAAGGGCTCACCTTACCCTCGGTAA 831 52.71 MALELFVSPKMDNMAASQETASQGLKRAEYLIRLFSDRQRQPQNSDHSDCSDLTDLAVSDFRKVISLLNRTGHARFRRGPIQSSPSSSSSTSSASLDPPQGLSLAPGFQSPVAPAAAAAQPPPSAPAGFVQFPTQGMTLDFRKPNNLNSNHQESTNLELSVSSSSLFMSSALTGDGSVSNGKLGSSIFLTPAPASSAGGKPPLSSVPYKKRCRDHSDNFSAKPPAPPLINQIHRKNRVKETIRVPAISSKIADIPADDYSWRKYGQKPIKGSPYPR 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 493419 494348 - Bma014515.1 Bma02g00060 77310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00060 276 MobiDBLite consensus disorder prediction 76 108 - -
Bma02g00060 276 Pfam Plant zinc cluster domain 234 253 IPR018872 -
Bma02g00060 276 Pfam WRKY DNA -binding domain 257 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma02g00060 276 ProSiteProfiles WRKY domain profile. 250 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma02g00060 276 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 7 276 - -
Bma02g00060 276 SUPERFAMILY WRKY DNA-binding domain 253 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma02g00060 276 Gene3D WRKY domain 234 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma02g00060 276 MobiDBLite consensus disorder prediction 80 99 - -
Bma02g00060 276 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 276 IPR044810 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00060 - - - bhj:120087087 272.322
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01315 Bma02g00060 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00060 Bma-Chr2:493419 Bma04g00033 Bma-Chr4:369663 1.43E-72 dispersed
Bma02g00060 Bma-Chr2:493419 Bma01g00400 Bma-Chr1:3338515 3.93E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g152 . . Bda01g00637 . . Bpe02g00506 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1696 . . . . Csa03g04408 . . . . . . . . Bma01g01315 Bma02g00060 . . . . . Car01g01194 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003596 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56840 PF03106 WRKY 3.70E-06 CL0274 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00060 Bma_Chr02 FPKM 32.788433 34.756935 27.282892 28.192266 26.546309 25.387571 29.621817 28.593872 26.26536 26.338856