Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00070 ATGGAAATTTGTTCGAGAGAAATTGAAGGAAAACTAGCAAATGATCCTATTTTTATGGAGAAGATGAGAAGCCAGTCTTCGTCCTCCCGATGCCTGTATGTGACTGGACCAGTGATAGTAGGCGCGGGGCCATCAGGGCTAGCCACTGCCGCCTGCCTGAAACTTAAAGGCGTCTCGAGCCTTCTTCTCGAAAGATCCAACTGTATAGCCGCTTTGTGGCAACTCAAAACCTACGATCGTCTGAGCCTTCATCTTCCCAAACAATTTTGCGAGCTACCTTTCATGGGGTTTCCTCAGAATTACCCCACTTACCCTTCCAAACGGCAATTCGTCGACTACCTGGAAGACTACGCCGAGAAGTTTGATATTAGGCCAAGGTTTAATGAGACTGTGTCAGAGGCCGAATACGATTCGAATATTGGGTTATGGCGCGTGAGGAGCGTGGGTTTGAAGGGGTCGACGACGGAGTATGTTTGCCGGTGGTTGATTGTGGCGACTGGGGAGAATGCGGAAGAGGTGTTGCCGGAATTTGAAGGAACGGAGGAATTCGATGGGCCTATTAGGCATACCAGTTCGTACAAGAGCGGGGAAGAGTTTAGAGAGAGAAAAGTTTTGGTGGTCGGGTGTGGTAATTCAGGCATGGAGGTTTGCTTGGATCTCTGCGATCATAATGCCAGCCCATCTCTCGTCGTTAGAAACACAGTACACGTCCTACCACGAGAGATGCTGGGAAAATCAACTTTCGGGCTGTCTATGTGGTTGCTCAAGTGGTTTCCCATTCGTTTTGTCGACAGGTTTTTACTGATCGTTTCCCGGTTCATGCTGGGGGACACATCCGAACTTGGGTTGGACAGACCGAAATTGGGTCCTCTGGAGCTCAAGAACATCTCAGGGAAGACCCCAGTTTTGGATGTTGGAACGCTGTCCAAGATCAAAAGTGGAGACATTAAGGTATGTCCAAGCATCAAACGGCTAAAATGCCACGCAGTGGAGTTTGTGAATGGACGAACAGAGAACTTTGATGCCATCATCTTAGCCACTGGTTACAGAAGCAACGTGCCCTACTGGCTAAAGGAGGGAGACATGTTTTCGAAAGAAGAAGGGTTTCCAAGAAGAGCATTTCCAGATGGGTGGAAAGGAGAAAGAGGGTTGTATGCAGTAGGGTTTACGAGAAGAGGACTGCTCGGAGCTTCAATGGATGCTAAGAGAATTGCAGAGGACATCCAGCGGTGTACGTCGGCCGATCAACCAAAGCACTGTAATAACCTCTTTAACAACTCCTCCGTTTAG 1290 48.6 MEICSREIEGKLANDPIFMEKMRSQSSSSRCLYVTGPVIVGAGPSGLATAACLKLKGVSSLLLERSNCIAALWQLKTYDRLSLHLPKQFCELPFMGFPQNYPTYPSKRQFVDYLEDYAEKFDIRPRFNETVSEAEYDSNIGLWRVRSVGLKGSTTEYVCRWLIVATGENAEEVLPEFEGTEEFDGPIRHTSSYKSGEEFRERKVLVVGCGNSGMEVCLDLCDHNASPSLVVRNTVHVLPREMLGKSTFGLSMWLLKWFPIRFVDRFLLIVSRFMLGDTSELGLDRPKLGPLELKNISGKTPVLDVGTLSKIKSGDIKVCPSIKRLKCHAVEFVNGRTENFDAIILATGYRSNVPYWLKEGDMFSKEEGFPRRAFPDGWKGERGLYAVGFTRRGLLGASMDAKRIAEDIQRCTSADQPKHCNNLFNNSSV 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 613889 616135 + Bma014525.1 Bma02g00070 77320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00070 429 Pfam Flavin-binding monooxygenase-like 39 356 IPR020946 GO:0004499|GO:0050660|GO:0050661
Bma02g00070 429 SUPERFAMILY FAD/NAD(P)-binding domain 38 308 IPR036188 -
Bma02g00070 429 PRINTS Pyridine nucleotide disulphide reductase class-II signature 36 58 - -
Bma02g00070 429 PRINTS Pyridine nucleotide disulphide reductase class-II signature 199 223 - -
Bma02g00070 429 SUPERFAMILY FAD/NAD(P)-binding domain 201 410 IPR036188 -
Bma02g00070 429 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 25 418 - -
Bma02g00070 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 203 221 - -
Bma02g00070 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 37 56 - -
Bma02g00070 429 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Bma02g00070 429 Gene3D - 37 417 IPR036188 -
Bma02g00070 429 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 25 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00070 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - tcc:18587919 672.544
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g00070 Bma04g00024 CCT
Bma02g00070 Bma04g00024 ECH
Bma01g01332 Bma02g00070 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00070 Bma-Chr2:613889 Bma11g00514 Bma-Chr11:6380400 0 dispersed
Bma04g00024 Bma-Chr4:306459 Bma02g00070 Bma-Chr2:613889 1.02E-124 transposed
Bma06g00509 Bma-Chr6:25611580 Bma02g00070 Bma-Chr2:613889 2.60E-85 transposed
Bma09g00493 Bma-Chr9:40966392 Bma02g00070 Bma-Chr2:613889 6.82E-175 transposed
Bma13g00738 Bma-Chr13:22920029 Bma02g00070 Bma-Chr2:613889 1.00E-176 transposed
Bma01g01332 Bma-Chr1:18514297 Bma02g00070 Bma-Chr2:613889 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g339 . . . Bda03g00026 Bpe02g01196 . Bma04g00024 . Cmo05g00631 Cmo12g00219 . Cma05g00605 . Car12g00249 Sed01g1287 Cpe07g00228 . Bhi04g00822 Tan02g2580 Cmetu03g1256 . Hepe10g0344 . Lcy13g1389 . . . . . . . Cone4ag1539 Cone7ag1413 Cone17ag1107 Cone20ag0614 . . . Cme03g01726 Blo17g00055 Blo18g00069 . . Bpe14g00534 . Bma01g01332 Bma02g00070 . . . . Cma12g00265 . Car05g00547 Cpe11g00528 . . . . . . . . Cla08g01237 Cam08g1694 Cec08g1273 Cco08g1394 Clacu08g1391 . Cre08g1176 Lsi08g01100 . Chy03g01231 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000974 4 2 5 4 5 2 3 2 2 2 2 2 4 2 2 4 2 7 4 2 2 2 2 2 2 2 2 2 2 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00070 Bma_Chr02 FPKM 1.677937 1.944708 2.668767 2.581563 3.557271 4.428667 3.521503 2.16382 2.135441 2.347553