Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00072 ATGGAGACGCCTTTACTGGTAGAAGAAACTGCGAAGAAAGTTCTTCGTCAGGTTGAGTTTTACTTTAGTGATAGTAATCTTCCTAGAGACAAATTTCTGAAAACAACCATCAGCGAGAGCCAAGATGGAATGGTCAGTTTGGCTCTGATATGCTCGTTTAGTCGGATGAGAAGCCATCTTAATTTAGGAGATGTGAAACCAGATGAAATCTCACAAGATACGTTGCAGTCTGTTGCAGAAATTCTTAGGAGGTCTACTTCTATCAAGGTTTCAGGAGATGGGACGAAAATTGGTCGGACTTCTGAATTATCAAAACCAGAAGATTTGGTGGAGCAGTTGGATATACGAACAATTGCTGCTTCGCCATTTGAATATGATGTGAAACTTGAAGACGTGGAGAATTTTTTTAGCAAATATGCTAAGGTTACCAGTGTGAGGCTGCCTCGTGTTGTTGCTGATAAGAGGTTTTTTTGCGGCACTGCTTTGGTTGAGTTTTCAACCGAAGAAGAAGCTAACAACATTTTGAATCAAAGTTTACTTCATGCAGGTGTTGAGTTAGAACTCAAACCAAAGAAAACTTTTGATGAAGAAAGAGAGATAGAGAGTGAGAAATTCAGTAACTCTTGTTCTTCCTTGAGTTCTATTCGTAAGATCAACTCGAGTACAGAACCAAACTATCCAAAAGGTTTAATAGTTTCTTTTACTCTAAAGAGCATCCCAGTGGGAGATTCTATTGAAGATAGTGGAAGTGATGCGCTAGTGTTTGATAGTTCTGCTCCATGCAAATCAGATGGAAGGCAAGAATCCCCTAATAACAATTCAGAAAAAGTTGAATCAGCATCAGCAAATGCCAAAGATGAAGGGAGCCCTGGCGATCAAGAACAACCACTTGAAGATCGCAGTGATGGAGTAGAAGAGTTTGAACAAAAAAATACAGTGTCTATTTACAAAGACAACATGAATGTTGTGTTGCGTGAGGATCTTAAGAGTATCTTTGAGAAGTTTGGCTCAGTGAAGTATATTGATTTCAAGATTGGAGAAGATTCAGGGTACATAAGGTTTGAAGAGCCTGAAGCCGCTCAAAAATCTCGTGCTGCTGCAGTTCTTGCAGAACAAGGTGGCCTGATTGTGAAAAATTATATAGCCATCTTAGAACCTGTCACAGGCGATGCAGAAAAAGAGTATTGGAGTCTTCTTCGCGGTAGTCAAGATAAACGCCGTGACAACAAGGGAAACCGAGGAAGGGGTGGGAAGTTCAACAGAGGTGGCAAGCATGACAGACACAGAGAAAGTGATTCCTTTTTGGGTCGCCATAGCAAGAGTCACAAAGTTGGAGCTGCCTAA 1344 40.77 METPLLVEETAKKVLRQVEFYFSDSNLPRDKFLKTTISESQDGMVSLALICSFSRMRSHLNLGDVKPDEISQDTLQSVAEILRRSTSIKVSGDGTKIGRTSELSKPEDLVEQLDIRTIAASPFEYDVKLEDVENFFSKYAKVTSVRLPRVVADKRFFCGTALVEFSTEEEANNILNQSLLHAGVELELKPKKTFDEEREIESEKFSNSCSSLSSIRKINSSTEPNYPKGLIVSFTLKSIPVGDSIEDSGSDALVFDSSAPCKSDGRQESPNNNSEKVESASANAKDEGSPGDQEQPLEDRSDGVEEFEQKNTVSIYKDNMNVVLREDLKSIFEKFGSVKYIDFKIGEDSGYIRFEEPEAAQKSRAAAVLAEQGGLIVKNYIAILEPVTGDAEKEYWSLLRGSQDKRRDNKGNRGRGGKFNRGGKHDRHRESDSFLGRHSKSHKVGAA 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 634373 638079 + Bma014528.1 Bma02g00072 77322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00072 447 SMART la 8 100 IPR006630 -
Bma02g00072 447 SMART rrm1_1 314 385 IPR000504 GO:0003723
Bma02g00072 447 SMART rrm1_1 117 189 IPR000504 GO:0003723
Bma02g00072 447 SUPERFAMILY RNA-binding domain, RBD 325 412 IPR035979 GO:0003676
Bma02g00072 447 Gene3D - 7 107 IPR036388 -
Bma02g00072 447 ProSiteProfiles xRRM domain profile. 306 427 IPR014886 GO:0003723
Bma02g00072 447 PANTHER BNAANNG34180D PROTEIN 2 446 - -
Bma02g00072 447 SUPERFAMILY Winged helix DNA-binding domain 5 104 IPR036390 -
Bma02g00072 447 MobiDBLite consensus disorder prediction 291 305 - -
Bma02g00072 447 CDD LA_like_plant 10 99 - -
Bma02g00072 447 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Bma02g00072 447 MobiDBLite consensus disorder prediction 256 305 - -
Bma02g00072 447 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bma02g00072 447 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bma02g00072 447 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Bma02g00072 447 Pfam La domain 14 83 IPR006630 -
Bma02g00072 447 PANTHER LUPUS LA PROTEIN-RELATED 2 446 IPR045180 -
Bma02g00072 447 MobiDBLite consensus disorder prediction 404 447 - -
Bma02g00072 447 Gene3D - 298 415 IPR012677 -
Bma02g00072 447 CDD RRM2_La_like 323 385 - -
Bma02g00072 447 Gene3D - 109 206 IPR012677 -
Bma02g00072 447 ProSiteProfiles La-type HTH domain profile. 4 107 IPR006630 -
Bma02g00072 447 MobiDBLite consensus disorder prediction 423 439 - -
Bma02g00072 447 Pfam RNA binding motif 323 415 IPR014886 GO:0003723
Bma02g00072 447 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Bma02g00072 447 MobiDBLite consensus disorder prediction 262 279 - -
Bma02g00072 447 SUPERFAMILY RNA-binding domain, RBD 108 178 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00072 K11090 LA, SSB; lupus La protein - jre:108984308 518.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00072 Bma-Chr2:634373 Bma04g00255 Bma-Chr4:2160032 3.66E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00072 Bma_Chr02 FPKM 0.118294 0.250431 0.295419 0.269768 0.785647 1.208675 1.501702 0.315609 0.504933 0.399075