Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00074 AGAGGCAGAGATGCTTCTTTCAACTCTGCAAGGTTGTCTTCCTCGTCTGCCATTTGCGAAGAAACAGAATCTTTTGGTAAAGACACCATGAAAGCATGCATTTGTTCTGCTACAATGTCACTCGGTACATCAAATGACCTTTCTGAGACGGAAGAGACGAAGATAAACACCAAGGAAAGATCAGTCAATCCTCTCCGTTGTGTATTGAATGATGCTGAGATGCCGATTAGAACGGAGCAATTAACTTCTCATTCGAGCATCAACAGCGGGCAAGGTTATAGGTTCTTCGCAGAGTTGGATAGAATTCGAGAAACTTTTGAAAGGGAATCTGGGAAAGTTCCCAGCTTGAGTTGCTGGGCAGAAGCAGCTGGAATTGAAGAAAAAGAATTGCAGCAGAATTTGTACTTTGGTTGGTTCTGTAGGGATGAGATCATAAGAAGCTCTCGTCCCCTTGTTTTATTCCTTGCTAGAAACTACAGGAGATCTGGACTGTCACTGGATGATTTAATTCAGGCTGGAAGCCTTGGTGTTCTTGAAGGCGCAAAAAGGTTCGATCAAACGAGGGGCTATAAGTTCTCGACCTATGTACAGTACTGGGTGAGGAAATCAATGTCAAGAATGGTGGACTGTTATTCAAGGGGAATTAGAGTTCCTTTGAGTTTAAGCAGGGCCATAAACCAGATTCAAAAAGCTCGGAAAATGTTCGACCAAACGAATACGAGACGCGTAGGGGACAGTGACATTGCAAGGGTCACCGGGCTGTCCTTAGCGAAAATCAGTGCGGCCAGAAGTTGCTTGAGAGTGGTTGGTTCAGTTGATCAGAAAATGGGGGATAGCCTTAATGCCAGATTCATGGAATATGTAGCTGATCTATCAATAGAGAGTCCAGAAGAAAGTGTGATGAGGAAACAGATGAGAAAAGACATTTATGATCTGCTTCATGGGTTGGATCTGAGAGAAAGGCAGGTTTTGTCTTTAAGATTCGGCCTCGACGACTATCGACCAAAGTCTCTGGCCGAAATTGGAAAACTCCTCCTCGTGAGCAAGGAGTGGGTTCGAAAGCTCGAGAGGCGAGCTCTTACGAAGATAACCAACGAACAAACTGCCAGAAACTTGACATCTTACTCGGTTGTGGTTCTTGTCGCCAACCTCTGCTTTGCCTCATCATCTACAGCCCATGATTTTTCTATACTCGAGGCCTTTGAGAATCTATTTCACCAGGATTATTCGCCTCCGGCTCCACCTCCGCCTCCTCCGCATCCACCATCCGTCTCATGCACCGATGATCTGAGCGGTGTTGGTTCTCTGGACACTACATGTGAGATAATCAGCGATGTGAACCTCACTCGAGATGTATATATTGCAGGGACGGGAAATTTTTATATCCTACCCGGAGTGAGTTTCAATTGTCCGACTCCTGGTTGCTCCATAACTATTAACATTACTGGTAATTTTAGCTTAAGCAATGATTCGGCCATTGTGACTGGGAGCTTCGAGTTGGTGGCGTATAATGCTAGCTTTTTCAATGGATCTGTGGTTAATACGACTGCTTTAGCTGGGAATCCTCCAGCCCAAACGAGTGGTACACCACAAGGAATAGATGGGGGTGGTGGGGGCCATGGGGGGAGGGGTGCCTGTTGCTTGATGGACATGAAAAAGCTTCCTGAGGACGTCTGGGGTGGTGACGCATACTCTTGGTCGTCACTGCAGAACCCTTGTAGTTATGGAAGTCGGGGTGGAACTACTAGCAAAGAGGTTGAATATGGAGGATTGGGCGGCGGAAGGGTGAAAATGGAAATTCATGATTTTCTTTTGGTGGATGGTAGTATGCTGGCTGACGGGGGTTATGGAGGGACTAAAGGTGGTGGTGGTTCGGGTGGCAGCATCTACATCAAGGCTTACAAGATGATTGGCAATGGCAGAATTAGTGCTTATGGAGGTGATGGACATGCTGGTGGTGGTGGTGGAAGAGTATCAGTTGATGTTTTCAGCAGGCATGATGACCCGCAGATTTTTGTTCATGGTGGGAGTAGTCTAGCATGTCCAGAAAATGCTGGTGCTGCTGGGACTTTGTATGATGCTGTTCCTAGGAGCCTTATTATAAGTAATCATAACCGGACCACAGACACAGACACTCTTCTTTTGGAGTTTCCTAATCAACCTCTCATGACGAATGTTTATGTTAGAAATAATGCTAGGGCTACAGTGCCTTTGCTTTGGAGCCGTGTCCAGGTGCAGGGACAGATTAGTCTATTATCCGGTGGAGTGTTGAGCTTCGGGCTAGCCCACTATGCCTCTTCTGAGTTTGAGTTGTTGGCAGAAGAACTTTTGATGAGTGACTCTGAAATCAAGTCTTTGCCAGTCTTTACAAGTTTTGATCCTATTTTCACATTGAATTTTGAACATGTGTATGGGGCACTGCGCATGTCTGTAAAAATGTTTTTGATGTGGAATTCCAAAATGCTCATAGATGGTGGTGGGGATTCAACTGTTGCAACATCCTTGCTTGAAGCGAGTAATTTGATTGTTCTCCGAGAATCATCTGTCATACATTCTAATGCAAATCTTGGAGTTCATGGACAAGGTCTATTGAACTTATCAGGAGCCGGGGATTGGATTGAAGCGCAACGTCTAGTTCTGTCACTTTTTTACAGTATTCATGTTGGACCTGGATCTATTTTGCGGGGCCCCCTGGAGGATGCAGCAACAGATGCTGTAACCCCAAGGCTGTATTGTGAGAATCAAGGTTGCCCAGTTGAACTACTTCATCCTCCTGAAGATTGCAATGTGAACTCGTCACTTTCTTTCACTCTTCAGATCTGTCGTGTTGAAGATATCAGCGTTGAGGGTCTTATAAAAGGTTCTGTTGTTCATTTTCACAGGGCAAGGACTGTAACTGTCCAGCCGTCTGGAACTATAAGTGCATCTGGAATGGGTTGCACAGGTGGCATGGGCCGAGGATCTATCTTAAGCAATGGGATTGGCAGTGGTGGCGGGCATGGTGGTAAAGGTGGGGCTGGGTGGTACAATGGTAGTAGTATAGAGGGTGGTATCTCATATGGAGATCCTGACTTGCCTTGTGAACTTGGTAGTGGAAGTGGAAATGAAAGTTCTGCTGGTTCGACTTCTGGTGGTGGTATCATTGTAATGGGCTCATCAGCTCATCCACTGTCAAGTTTATCCATAGCTGGCTTAATGACGGCTGATGGAGAAAATTTTGAAGAAACTGCTAAGAGGAAACAATTTGCAATTATTGGTGGTTCGAATGGAGGCCCTGGAGGTGGCTCTGGTGGAAGTATACTTCTGTTTCTGCGTACTTTGGCTCTTGATGAGTCTGGTGTGTTATCCAGTGTTGGGGGTTATGGTGGATCAAATGGGGGTGGTGGAGGCGGTGGTGGAAGAATTCATTTTCATTGGTCAGAGATACCTACAGGAGATGTATACCAGCCCATTGCCAGTGTTAAGGGACTAATAAATAGAGGGTTATTACTTTTCAATTTTGATAATTGTTGCCATGTGTTCATGGTTTTCCTTGTGCTGCATATTGATGTTTTGCAATTCATACCCATCTATATGTTCTTACTTTCGAAATTTTCATCGACTTTCTCAGAATGTCCAGTTGGTACATACAAGAATGACAGTGGATCTGATAAATTACTATGTCAACTTTGTCCTGCAAATGAACTTCCTCATCGAGCCATTTACATTGCCATTCGAGGTGGAATCGCTGAAACTCCTTGCCCTTACAAGTGTATTTCAGATAGATATCACATGCCAAACTGCTATACAGCTCTTGAAGAATTGATTTATACCTTTGGTGGCCCTTGGTTATTTGGTCTTCTTCTTATAGGTGTCCTCATCCTATTAGCCATGGTGCTTAGTGTTGCGCGAATGAAATTTGTTGGTGTTGATGAATTACTTGGTCCTACTCCCACTCAACAAGAAAACCAAATTGATCATTCTTTCCCATTCTTGGAGTCATTGAATGAGGTCTTAGAAACAAACAGGGCAGAAGAGTCGCAGAGTCATGTGCACAGAATGTTTTTTATGGGTCCCAATACTTTCAGTGAGCCTTGGCATCTTCCGCACACCCCTCCTGATCAACTAAAAGAAATTGTATATGAAGGTGCATTCAACACTTTTGTCGACGAAATCAATGCTATTTCCACTTATCAGTGGTGGGAGGGCGCAATGTACAGCATTCTCTGTGTTCTTGCCTACCCACTTGCATGGTCATGGCAGCAATGGCGCCGCAAAATAAAATTGCAACGACTGCGTGAGTTTGTCAGATCAGAGTATGATCATGCTTGCTTGCGTTCTTGTAGATCTCGTGCTCTTTATGAAGGAATTAAGGTCGCTGCAACTTCTGATTTAATGCTAGCATATGTTGACTTCTTCCTGGGTGGAGATGAAAAAAGAACTGATCTTCCTCCTCGCTTACAGCAAAGATTTCCATTATCCTTACTTTTTGGAGGGGATGGAAGCTACATGGCTTCTTTCTCGCTTCACAATGATAATGTTCTTACTAGCCTCATGGGTCAGTCCGTCCCACCTACCACATGGTATCGCGTGGTTGCTGGTTTGAATGCACAATTACGATTGGTTCGTCGCGGCCGGTTGAGAGCGACATTTCAACCTGTTCTTAGATGGATTGAAAACTTTGCCAATCCTTCCCTTAAGAATCATGGTATCCGTGTTGATCTTGCCTGGTTTCAGGCTACAGCTAGCGGTTATTATCAATATGGTCTCCTGTTATATGCAGCTGAAGAAAGCCATTCTATATCCATCCGAAATTCTCATGCAACAGTTAGAAATGATCCGTTGTCTGGTTCAAAGAAGGTTCCTAGAGAAATTCCAGCTGGTCACTTGAGGGAAGAACGGCGATTAATACCGGCACATAGATCCAATGACAGTCAAACATGGGGAAAGAGGACGTATGGTGGCATTCTCAATTCTAGTAGTTTAAAAGTGCTTGAAGAAAAGAGAGATGTATCTTCCCTTCTCTCTTTTATGCTTCATAACACGAAACCCGTTGGACACCAGGATCTCGTGGGCTTAGTTATCTCAATGCTACTTTTAGGAGATTTCAGCTTGGTTTTGCTTACTTTGCTCCAGTTGTATTCCTTTTCACTGGCAGATGTATTTCTAGTTTTGTTCGTCTTGCCTCTTAGCATTCTTCTTCCTTTCCCTGCTGGAATAAATGCTCTGTTCAGCCACGAACCTAGGCGATCAGCAGGCCTTGCACGCGTCTATGCTATGTGGAACATCACGTCTTTCATAAATGTTTTGGTTGCATTTATTTGTGGATTCGTTCACTTGAAATCACAATCATCATCAAGTAAAAAGCAGCCCAACTTTCAGCCATGGAATATTAGCATGGACGAAAGCGAATGGTGGTTTTTTCCGGCAGGTCTTGTTGTCTGTAAATTGCTCCAATCCCGACTCATTAATTGGCACGTCGGGAACCTGGAGATACAGGACCGATCGTTGTACAGTAATGATTTTGACCTCTTCTGGCAGTCTTGA 5526 44.44 RGRDASFNSARLSSSSAICEETESFGKDTMKACICSATMSLGTSNDLSETEETKINTKERSVNPLRCVLNDAEMPIRTEQLTSHSSINSGQGYRFFAELDRIRETFERESGKVPSLSCWAEAAGIEEKELQQNLYFGWFCRDEIIRSSRPLVLFLARNYRRSGLSLDDLIQAGSLGVLEGAKRFDQTRGYKFSTYVQYWVRKSMSRMVDCYSRGIRVPLSLSRAINQIQKARKMFDQTNTRRVGDSDIARVTGLSLAKISAARSCLRVVGSVDQKMGDSLNARFMEYVADLSIESPEESVMRKQMRKDIYDLLHGLDLRERQVLSLRFGLDDYRPKSLAEIGKLLLVSKEWVRKLERRALTKITNEQTARNLTSYSVVVLVANLCFASSSTAHDFSILEAFENLFHQDYSPPAPPPPPPHPPSVSCTDDLSGVGSLDTTCEIISDVNLTRDVYIAGTGNFYILPGVSFNCPTPGCSITINITGNFSLSNDSAIVTGSFELVAYNASFFNGSVVNTTALAGNPPAQTSGTPQGIDGGGGGHGGRGACCLMDMKKLPEDVWGGDAYSWSSLQNPCSYGSRGGTTSKEVEYGGLGGGRVKMEIHDFLLVDGSMLADGGYGGTKGGGGSGGSIYIKAYKMIGNGRISAYGGDGHAGGGGGRVSVDVFSRHDDPQIFVHGGSSLACPENAGAAGTLYDAVPRSLIISNHNRTTDTDTLLLEFPNQPLMTNVYVRNNARATVPLLWSRVQVQGQISLLSGGVLSFGLAHYASSEFELLAEELLMSDSEIKSLPVFTSFDPIFTLNFEHVYGALRMSVKMFLMWNSKMLIDGGGDSTVATSLLEASNLIVLRESSVIHSNANLGVHGQGLLNLSGAGDWIEAQRLVLSLFYSIHVGPGSILRGPLEDAATDAVTPRLYCENQGCPVELLHPPEDCNVNSSLSFTLQICRVEDISVEGLIKGSVVHFHRARTVTVQPSGTISASGMGCTGGMGRGSILSNGIGSGGGHGGKGGAGWYNGSSIEGGISYGDPDLPCELGSGSGNESSAGSTSGGGIIVMGSSAHPLSSLSIAGLMTADGENFEETAKRKQFAIIGGSNGGPGGGSGGSILLFLRTLALDESGVLSSVGGYGGSNGGGGGGGGRIHFHWSEIPTGDVYQPIASVKGLINRGLLLFNFDNCCHVFMVFLVLHIDVLQFIPIYMFLLSKFSSTFSECPVGTYKNDSGSDKLLCQLCPANELPHRAIYIAIRGGIAETPCPYKCISDRYHMPNCYTALEELIYTFGGPWLFGLLLIGVLILLAMVLSVARMKFVGVDELLGPTPTQQENQIDHSFPFLESLNEVLETNRAEESQSHVHRMFFMGPNTFSEPWHLPHTPPDQLKEIVYEGAFNTFVDEINAISTYQWWEGAMYSILCVLAYPLAWSWQQWRRKIKLQRLREFVRSEYDHACLRSCRSRALYEGIKVAATSDLMLAYVDFFLGGDEKRTDLPPRLQQRFPLSLLFGGDGSYMASFSLHNDNVLTSLMGQSVPPTTWYRVVAGLNAQLRLVRRGRLRATFQPVLRWIENFANPSLKNHGIRVDLAWFQATASGYYQYGLLLYAAEESHSISIRNSHATVRNDPLSGSKKVPREIPAGHLREERRLIPAHRSNDSQTWGKRTYGGILNSSSLKVLEEKRDVSSLLSFMLHNTKPVGHQDLVGLVISMLLLGDFSLVLLTLLQLYSFSLADVFLVLFVLPLSILLPFPAGINALFSHEPRRSAGLARVYAMWNITSFINVLVAFICGFVHLKSQSSSSKKQPNFQPWNISMDESEWWFFPAGLVVCKLLQSRLINWHVGNLEIQDRSLYSNDFDLFWQS 1841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 645056 659247 + Bma014530.1 Bma02g00074 77324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00074 1841 Pfam Sigma-70 region 3 224 299 IPR007624 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 141 365 IPR014284 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 CDD Sigma70_r4 306 363 - -
Bma02g00074 1841 Gene3D - 216 368 - -
Bma02g00074 1841 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 217 290 IPR013324 -
Bma02g00074 1841 Pfam Sigma-70, region 4 312 363 IPR007630 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 PANTHER - 378 1840 - -
Bma02g00074 1841 MobiDBLite consensus disorder prediction 408 428 - -
Bma02g00074 1841 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 101 208 IPR013325 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 Pfam Sigma-70 region 2 145 207 IPR007627 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 276 365 IPR013324 -
Bma02g00074 1841 Gene3D - 38 213 - -
Bma02g00074 1841 MobiDBLite consensus disorder prediction 409 424 - -
Bma02g00074 1841 PRINTS Major sigma-70 factor signature 316 328 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 PRINTS Major sigma-70 factor signature 192 200 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 PRINTS Major sigma-70 factor signature 352 363 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 PRINTS Major sigma-70 factor signature 168 181 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 PRINTS Major sigma-70 factor signature 337 352 IPR000943 GO:0003700|GO:0006352|GO:0006355
Bma02g00074 1841 PANTHER EPHRIN TYPE-B RECEPTOR 378 1840 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00074 - - - bhj:120075785 2033.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00216 Bma-Chr1:1915471 Bma02g00074 Bma-Chr2:645056 0 dispersed
Bma02g00074 Bma-Chr2:645056 Bma14g00129 Bma-Chr14:1852423 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g41 . . . . . . . . . . . . . Car12g00216 . Cpe07g00200 . Bhi04g00880 . . . Hepe10g0388 . Lcy13g1442 . . . . . . . . . . . . . . . . . . Bda13g01318 . . . Bma02g00074 . . . . . . . . . . . . . . . . Cla08g01199 Cam08g1661 Cec08g1238 Cco08g1357 Clacu08g1358 . Cre08g1145 . Csa02g02244 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001361 2 3 2 2 2 2 3 2 2 2 2 2 3 2 1 3 2 4 3 1 2 2 2 2 2 2 2 12 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00074 Bma_Chr02 FPKM 0.0 0.0 9.352175 11.13469 0.627589 0.0 0.429916 1.329784 0.0 0.0