Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00080 ATGGCGAGCACACTCAAGGAGATGGAAAACGGTGGAGGTGTTGACGATGTTTATGGTGAAGATACAGCCACCGAGGATCAGCTTGTCACTCCCTGGACTGTCTCTGTTGCTAGGGTGATTAAGCCGCTTAGTTTCGAAAAACTGGACAACTACATGCACCAGTTCAAGGGTAGTAGCTCAAGCATTGGTGCCCAGAAGGTGACTAATGGATGTGCAATGTTCAGGGAATACTGCTCTGCTAGAAATGTTGAAGGATGTATCTGGAGTTTTCAACTAGTTAAACAAGAGCATGAAATTCTGAGGAAGAAGCTTGACTCTTATTTCCAGGTTTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTCTCCGATGGGATGCTCTTTTTTGCAGCTGGTAA 426 45.77 MASTLKEMENGGGVDDVYGEDTATEDQLVTPWTVSVARVIKPLSFEKLDNYMHQFKGSSSSIGAQKVTNGCAMFREYCSARNVEGCIWSFQLVKQEHEILRKKLDSYFQVLLSLSLSLSLSLSLSLSLSFVLRWDALFCSW 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 681884 691983 - Bma014536.1 Bma02g00080 77330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00080 141 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 42 110 IPR036641 GO:0000160
Bma02g00080 141 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 2-LIKE 39 112 - -
Bma02g00080 141 PANTHER - 39 112 IPR045871 GO:0000160|GO:0009927|GO:0043424
Bma02g00080 141 Gene3D HPT domain 3 114 IPR036641 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00080 K14490 AHP; histidine-containing phosphotransfer peotein - csv:101219195 111.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00080 Bma-Chr2:681884 Bma04g01060 Bma-Chr4:19865640 1.19E-19 dispersed
Bma02g00080 Bma-Chr2:681884 Bma02g00869 Bma-Chr2:46851820 3.27E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g7 . . . . . . . . . . . . . Car12g00224 . Cpe07g00204 . Bhi04g00869 Tan06g0248 . . Hepe10g0379 . Lcy13g1433 . . . . . . . . . . . . . . . Blo17g00302 . . Bda13g01324 . . . Bma02g00080 . . . . Cma12g00241 . . . . . . . . . . . Cla08g01208 Cam08g1670 Cec08g1248 Cco08g1365 Clacu08g1367 . Cre08g1152 . Csa02g02253 . .
Vvi4g10 . . . . . . . . . . . . . . Sed02g1237 Cpe07g00202 . Bhi04g00872 Tan02g2543 Cmetu02g0241 . . . . . . . . . . . . . . . . . . . . . . Bda13g01323 . . . Bma02g00080 . . . . Cma12g00238 . . . . . . . . . . . Cla08g01206 Cam08g1667 Cec08g1245 Cco08g1363 Clacu08g1365 . Cre08g1150 . Csa02g02251 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001289 2 6 0 1 2 1 3 1 1 1 2 1 3 3 3 4 1 3 3 1 3 2 2 3 2 3 3 7 5 3 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00080 Bma_Chr02 FPKM 0.157943 0.0 0.0 0.070795 0.083324 0.0 0.0 0.059472 0.055571 0.0