Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00084 ATGGCCGACTCGGGAACCTCTCCTCACTGCAAATTGTCCGGTAAAGTTGTCTCAGTCGCTGCCGGCGAATCTCACACCCTCGCTCTCACCGGAGATGGATGCGTCTATTCATGGGGAAAGGGAATGTTTGGGCGTCTCGGCACTGGTTCCGAAACCGATGAGCTTTCTCCCGTTCTAGTCAATTTCGAAATGGAAGAAGAGAGGCTCAAATTCATAGGAGTTGCTGCTGGTGCTTATCACAGTCTTGCTCTTGCAGGTGATGGTTCAGTTTGGTGCTGGGGTTTCAACGTCTATGGTCAACTTGGTTTCAATGGCGAGAATCGTCCCCGCCCGTGTCTGCTTAGGAATTTCTCCGAGAGCTGTTCTCCTGATTCTTCGACTAATGAATCAGATGCAGAAATTAAACTGCCATTAAAGTTTTGTCTGGTTAAAGCCGGTGGAATGATGTCTCTTGCGATCGACGATCACGGAGTCCTCTGGATGTGGGGCGATTTTCCGGAACCAAATGCCAGCAACGAAGGCCAGTTCTCTCTTACAAGTAGTTTCATTCCGACTCCTATCAAATTTTTTGATGGAATCACTGTTGTTAAAGTTGGATGTGGAAATGAACATGTAGTTGTTCTTGTTAGTACTGGAGAAACCCACAATGTTGAAGATTTGGCTTGCTACTCTTGGGGAAACAACAGCTTCGGCCAATTAGGACTCGGGGATAGAGAGAGCCGGCTGAATCCGCAGCTCATCGATAAGTTCAACAAAGAATCTCCTTGGAAAGTTTACGAGGTAGCTTGTGGGGCGTCCCACACAGCTCTGCTAAGTCACAGAAAGTGTTCAAATGGAAAAATAGAGAGTCTATGCTGGACTTTCGGTCTAGGAGAAAACGGGCAGCTCGGACAAGGAATGACCCGAAGTGAATTGCTTCCTCAACCTGTTAAAGAATTGCCAAATGATGTAGAGCTGATTTCTGTGGACTGTGGATTGTTTCACACAAGTGTTGTATCATCGGACGGTGATGTATGGTCTTGGGGGATGGAGAAGGGTCTCGGGCTATGCCCAGATGCTTGTTTTGCCTGGCACTGA 1077 47.63 MADSGTSPHCKLSGKVVSVAAGESHTLALTGDGCVYSWGKGMFGRLGTGSETDELSPVLVNFEMEEERLKFIGVAAGAYHSLALAGDGSVWCWGFNVYGQLGFNGENRPRPCLLRNFSESCSPDSSTNESDAEIKLPLKFCLVKAGGMMSLAIDDHGVLWMWGDFPEPNASNEGQFSLTSSFIPTPIKFFDGITVVKVGCGNEHVVVLVSTGETHNVEDLACYSWGNNSFGQLGLGDRESRLNPQLIDKFNKESPWKVYEVACGASHTALLSHRKCSNGKIESLCWTFGLGENGQLGQGMTRSELLPQPVKELPNDVELISVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDACFAWH 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 702368 703960 + Bma014540.1 Bma02g00084 77334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00084 358 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 74 84 IPR000408 -
Bma02g00084 358 PRINTS Chromosome condensation regulator RCC1 signature 198 214 IPR000408 -
Bma02g00084 358 PRINTS Chromosome condensation regulator RCC1 signature 34 50 IPR000408 -
Bma02g00084 358 PRINTS Chromosome condensation regulator RCC1 signature 325 343 IPR000408 -
Bma02g00084 358 PRINTS Chromosome condensation regulator RCC1 signature 71 84 IPR000408 -
Bma02g00084 358 PRINTS Chromosome condensation regulator RCC1 signature 90 106 IPR000408 -
Bma02g00084 358 PRINTS Chromosome condensation regulator RCC1 signature 157 173 IPR000408 -
Bma02g00084 358 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 33 87 IPR000408 -
Bma02g00084 358 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 335 IPR000408 -
Bma02g00084 358 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 9 354 - -
Bma02g00084 358 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 261 271 IPR000408 -
Bma02g00084 358 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 88 156 IPR000408 -
Bma02g00084 358 Gene3D - 218 353 IPR009091 -
Bma02g00084 358 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 220 274 IPR000408 -
Bma02g00084 358 Gene3D - 3 217 IPR009091 -
Bma02g00084 358 Pfam Regulator of chromosome condensation (RCC1) repeat 32 84 IPR000408 -
Bma02g00084 358 Pfam Regulator of chromosome condensation (RCC1) repeat 222 271 IPR000408 -
Bma02g00084 358 Pfam Regulator of chromosome condensation (RCC1) repeat 87 153 IPR000408 -
Bma02g00084 358 Pfam Regulator of chromosome condensation (RCC1) repeat 285 331 IPR000408 -
Bma02g00084 358 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 157 211 IPR000408 -
Bma02g00084 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 9 354 - -
Bma02g00084 358 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 19 29 IPR000408 -
Bma02g00084 358 SUPERFAMILY RCC1/BLIP-II 13 344 IPR009091 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00084 - - - jre:109009487 502.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00084 Bma-Chr2:702368 Bma15g00766 Bma-Chr15:15856068 6.25E-18 dispersed
Bma02g00084 Bma-Chr2:702368 Bma09g00447 Bma-Chr9:38385107 3.24E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g284 . . . . . . . . . . . . . Car12g00232 . . . Bhi04g00858 . . . . . . . . . . . . . . . . . . . . . . . . . Bpe14g00520 . . Bma02g00084 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009895 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00084 Bma_Chr02 FPKM 7.956113 9.469048 5.82072 5.883008 11.831095 13.030577 11.294469 3.951217 3.882372 4.355336