Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00102 | ATGGATCGGATCCCTGGCAGACCTGTAAAAGTTCATTTCATGCGTGCACGATCCAGTTCATTGTATCAAGCTTTTTCTTGGCCAATATCATCAGCGAGAGAGAGAGAGAGAGAGAGAGAGATGGAACTCAATGAAGTGTTAGTCTCTCTGCGAAGAGAAGTTTGGGAGGATGACATTCCCACTGAAATGAACGACCTTTTCTCCCCTGACTGGCCATCCTATCAAAACGCGGCTGATTTTGTTCCACATTCTTCGTTCGAAGCACTCTCTCCGTCGTTCGAACGAAGCTTCGCCAGCTTCCCTTTGGATCAATCCTGCTACTGCCCTTCCGCTAACGATTTATCAGGAATGGAAAACACCGATTCTTCTTATAATGGCTTTCAAATATCCCCTTTTACGTTCCCCATTTCTTATTTGCACAAAGAAGAACTCTGTGTACTTCCCTTTGAAGCCTCTTGCGAAATGGAGGAAGTTCGAACGACGGAAGTGGACGTTCGAACGAAGAAATTGCAGAGGAAGCCATCGAAGAATCTGATGGCCGAGAGAAGACGAAGAAAGCGACTGAATGAGAGGCTCTCAATGCTACGATCCATTGTCCCTAAGATAAGCAAGATGGACAGAACTGCCATACTTGGAGACACCATAGATTACATGAAAGAACTGTTCGAGAAAATCAGCTGCTTGAAACGAGAAATCGCAGTGGGTGCTAATCAGTTTGAGTCAGTGGGTCCTTGTAGGGACGTCAAATTAGACGAATCCTTGGTTAAAACTTCCCAAAAGCTGGAGGTGGAAGAAAGAAATGGCGAAACATGGATCGAGATTCGCTGCTCAGGAAAGCCCGGTTTATTGTCACTCACAGTGAATACTCTCGAAGCATTAGGCCTTGAGATCAAAGAGTGCGTTATTAGCTCCTTCAATGACTTTGCAATGCAAGCTTCCTGTTCAAAGGAATCCAAGCAAGGAACAATGGCGGATCCTGAAGATATAAAGAATGCATTGTTCAGAACTGCAGGATATGAAGGAAGACGAATGTAA | 1035 | 44.83 | MDRIPGRPVKVHFMRARSSSLYQAFSWPISSAREREREREMELNEVLVSLRREVWEDDIPTEMNDLFSPDWPSYQNAADFVPHSSFEALSPSFERSFASFPLDQSCYCPSANDLSGMENTDSSYNGFQISPFTFPISYLHKEELCVLPFEASCEMEEVRTTEVDVRTKKLQRKPSKNLMAERRRRKRLNERLSMLRSIVPKISKMDRTAILGDTIDYMKELFEKISCLKREIAVGANQFESVGPCRDVKLDESLVKTSQKLEVEERNGETWIEIRCSGKPGLLSLTVNTLEALGLEIKECVISSFNDFAMQASCSKESKQGTMADPEDIKNALFRTAGYEGRRM | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 926035 | 927436 | - | Bma014556.1 | Bma02g00102 | 77352 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00102 | 344 | Gene3D | - | 162 | 222 | IPR036638 | GO:0046983 | |
Bma02g00102 | 344 | PANTHER | - | 160 | 343 | - | - | |
Bma02g00102 | 344 | Coils | Coil | 33 | 53 | - | - | |
Bma02g00102 | 344 | Pfam | Helix-loop-helix DNA-binding domain | 178 | 221 | IPR011598 | GO:0046983 | |
Bma02g00102 | 344 | CDD | ACT_UUR-ACR-like | 272 | 311 | - | - | |
Bma02g00102 | 344 | SMART | finulus | 178 | 227 | IPR011598 | GO:0046983 | |
Bma02g00102 | 344 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 172 | 221 | IPR011598 | GO:0046983 | |
Bma02g00102 | 344 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 160 | 343 | - | - | |
Bma02g00102 | 344 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 175 | 237 | IPR036638 | GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma02g00102 | Bma04g00423 | CCT | |
Bma01g01364 | Bma02g00102 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma02g00102 | Bma-Chr2:926035 | Bma14g01421 | Bma-Chr14:26921993 | 4.40E-31 | dispersed | |
Bma06g00283 | Bma-Chr6:4002723 | Bma02g00102 | Bma-Chr2:926035 | 2.31E-25 | transposed | |
Bma01g01364 | Bma-Chr1:20572559 | Bma02g00102 | Bma-Chr2:926035 | 4.85E-55 | wgd | |
Bma15g01082 | Bma-Chr15:43172903 | Bma02g00102 | Bma-Chr2:926035 | 9.44E-45 | wgd | |
Bma02g00102 | Bma-Chr2:926035 | Bma04g00423 | Bma-Chr4:3423204 | 5.97E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56843 | PF00010 | HLH | 7.10E-09 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00102 | - | - | pvy:116137706 | 285.804 |