Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00102 ATGGATCGGATCCCTGGCAGACCTGTAAAAGTTCATTTCATGCGTGCACGATCCAGTTCATTGTATCAAGCTTTTTCTTGGCCAATATCATCAGCGAGAGAGAGAGAGAGAGAGAGAGAGATGGAACTCAATGAAGTGTTAGTCTCTCTGCGAAGAGAAGTTTGGGAGGATGACATTCCCACTGAAATGAACGACCTTTTCTCCCCTGACTGGCCATCCTATCAAAACGCGGCTGATTTTGTTCCACATTCTTCGTTCGAAGCACTCTCTCCGTCGTTCGAACGAAGCTTCGCCAGCTTCCCTTTGGATCAATCCTGCTACTGCCCTTCCGCTAACGATTTATCAGGAATGGAAAACACCGATTCTTCTTATAATGGCTTTCAAATATCCCCTTTTACGTTCCCCATTTCTTATTTGCACAAAGAAGAACTCTGTGTACTTCCCTTTGAAGCCTCTTGCGAAATGGAGGAAGTTCGAACGACGGAAGTGGACGTTCGAACGAAGAAATTGCAGAGGAAGCCATCGAAGAATCTGATGGCCGAGAGAAGACGAAGAAAGCGACTGAATGAGAGGCTCTCAATGCTACGATCCATTGTCCCTAAGATAAGCAAGATGGACAGAACTGCCATACTTGGAGACACCATAGATTACATGAAAGAACTGTTCGAGAAAATCAGCTGCTTGAAACGAGAAATCGCAGTGGGTGCTAATCAGTTTGAGTCAGTGGGTCCTTGTAGGGACGTCAAATTAGACGAATCCTTGGTTAAAACTTCCCAAAAGCTGGAGGTGGAAGAAAGAAATGGCGAAACATGGATCGAGATTCGCTGCTCAGGAAAGCCCGGTTTATTGTCACTCACAGTGAATACTCTCGAAGCATTAGGCCTTGAGATCAAAGAGTGCGTTATTAGCTCCTTCAATGACTTTGCAATGCAAGCTTCCTGTTCAAAGGAATCCAAGCAAGGAACAATGGCGGATCCTGAAGATATAAAGAATGCATTGTTCAGAACTGCAGGATATGAAGGAAGACGAATGTAA 1035 44.83 MDRIPGRPVKVHFMRARSSSLYQAFSWPISSAREREREREMELNEVLVSLRREVWEDDIPTEMNDLFSPDWPSYQNAADFVPHSSFEALSPSFERSFASFPLDQSCYCPSANDLSGMENTDSSYNGFQISPFTFPISYLHKEELCVLPFEASCEMEEVRTTEVDVRTKKLQRKPSKNLMAERRRRKRLNERLSMLRSIVPKISKMDRTAILGDTIDYMKELFEKISCLKREIAVGANQFESVGPCRDVKLDESLVKTSQKLEVEERNGETWIEIRCSGKPGLLSLTVNTLEALGLEIKECVISSFNDFAMQASCSKESKQGTMADPEDIKNALFRTAGYEGRRM 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 926035 927436 - Bma014556.1 Bma02g00102 77352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00102 344 Gene3D - 162 222 IPR036638 GO:0046983
Bma02g00102 344 PANTHER - 160 343 - -
Bma02g00102 344 Coils Coil 33 53 - -
Bma02g00102 344 Pfam Helix-loop-helix DNA-binding domain 178 221 IPR011598 GO:0046983
Bma02g00102 344 CDD ACT_UUR-ACR-like 272 311 - -
Bma02g00102 344 SMART finulus 178 227 IPR011598 GO:0046983
Bma02g00102 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Bma02g00102 344 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 160 343 - -
Bma02g00102 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 237 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g00102 Bma04g00423 CCT
Bma01g01364 Bma02g00102 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00102 Bma-Chr2:926035 Bma14g01421 Bma-Chr14:26921993 4.40E-31 dispersed
Bma06g00283 Bma-Chr6:4002723 Bma02g00102 Bma-Chr2:926035 2.31E-25 transposed
Bma01g01364 Bma-Chr1:20572559 Bma02g00102 Bma-Chr2:926035 4.85E-55 wgd
Bma15g01082 Bma-Chr15:43172903 Bma02g00102 Bma-Chr2:926035 9.44E-45 wgd
Bma02g00102 Bma-Chr2:926035 Bma04g00423 Bma-Chr4:3423204 5.97E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56843 PF00010 HLH 7.10E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00102 - - pvy:116137706 285.804