Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00105 ATGGGGAAGGGGAAGATCGTGATACGAAGGATCGATAATTTGTCGAATAGACAGGTGACGTTCTCGAAGCGGCGGAACGGATTGCTGAAGAAGGCAAAGGAGCTAGCGATCCTTTGCGATGCCGAGGTAGGAGTCATTATCTTTTCCAGCACAGGCAAGCTCTACGATTACGCCAGTACCAGCATGAAATCCGTAACTGAAAGATACAACAAGACCAGAGATGAACATCATCAGCTTGAAAACCCAACATCTGAGGTCAAGTTCTGGCAAAGGGAAGCGGGCCAGTTTTGGCAGCAACTACATCATTTGCAAGAAAACCACAGGCAGATTATGGGTGAAGAGCTATCTGGTTTGAGCGTCAAAGATCTACAAAGTCTGGAGAACCAACTGGAAGCTAGTCTTCGTGGAGTCCGTATGAAAAAGGATCAAATCCTAAAGGATGAAATACAAGAGCTAACTGACAAGGGGCGACTAATTCGCGAAGAAAATGAGGAACTCTATAAGAAGATCTATGGATCAGGATATAGAAATGGAGCAAATAGAGAAACCTTTCTCGCAAATAATCTGGATTTCACTGGGAACTCACATGCACATATCCATCTCCACCTTTGTCCACCACAACAAGATAACGAAGCAACAGCATTGGGACTACAACTACCTTAA 663 44.49 MGKGKIVIRRIDNLSNRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDYASTSMKSVTERYNKTRDEHHQLENPTSEVKFWQREAGQFWQQLHHLQENHRQIMGEELSGLSVKDLQSLENQLEASLRGVRMKKDQILKDEIQELTDKGRLIREENEELYKKIYGSGYRNGANRETFLANNLDFTGNSHAHIHLHLCPPQQDNEATALGLQLP 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 951013 968218 - Bma014559.1 Bma02g00105 77355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00105 220 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma02g00105 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma02g00105 220 Gene3D - 14 109 IPR036879 GO:0003677|GO:0046983
Bma02g00105 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma02g00105 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma02g00105 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma02g00105 220 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Bma02g00105 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 213 - -
Bma02g00105 220 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma02g00105 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma02g00105 220 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bma02g00105 220 Coils Coil 149 169 - -
Bma02g00105 220 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 213 - -
Bma02g00105 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01374 Bma-Chr1:21298583 Bma02g00105 Bma-Chr2:951013 1.81E-40 dispersed
Bma02g00105 Bma-Chr2:951013 Bma12g00686 Bma-Chr12:29282056 3.71E-46 dispersed
Bma04g00849 Bma-Chr4:10713036 Bma02g00105 Bma-Chr2:951013 4.67E-36 dispersed
Bma08g00038 Bma-Chr8:560062 Bma02g00105 Bma-Chr2:951013 5.24E-35 dispersed
Bma02g00105 Bma-Chr2:951013 Bma08g00348 Bma-Chr8:6414917 1.09E-43 transposed
Bma02g00105 Bma-Chr2:951013 Bma14g01676 Bma-Chr14:35661221 1.82E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56844 PF01486 K-box 2.10E-25 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00105 K09264 - sly:101262808 310.071