Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00108 ATGTCTGGAAACCTGAGGTGCGTGATCGTGGCAGTCGATGGCAGCGAGGAGAGCATGAGGGCCTTGAAATGGGCGCTCGACAACCTCAAGCTACGATCTTCTGATCATGATTCACCTGACGGCACCTTCGTCGTTCTTCATGTTCAATCCCCACCCTCCATCTCCGCAGGTCTCAGTCCCGCTGCTATACCCTTTGGTGGACCAAGTGATGTGGAGGTCCCTGCATTCACTGCAGCTATTGAAGCGCACCAAAAAAGGATCACCGAAGCGATTCTAGGCCATGCTTCGCATATTTGTTCTTCGTACGACATTAAGGTAAGAACTCAGGTAGTAATTGGGGATCCAAAAGAGAAGATCTGTGAAGTTGTTGAGAATTCGCATGCTGATCTTCTCGTAATGGGTTTTCGTGCTTTTGGCCCTATCAAAAGGATGTTTCTGGGAAGTGTGAGCAACTATTGCACAAACCATGCAATGTGCCCTGTCATTATAGTCAAGGGTAAACTGAGCTGA 510 48.63 MSGNLRCVIVAVDGSEESMRALKWALDNLKLRSSDHDSPDGTFVVLHVQSPPSISAGLSPAAIPFGGPSDVEVPAFTAAIEAHQKRITEAILGHASHICSSYDIKVRTQVVIGDPKEKICEVVENSHADLLVMGFRAFGPIKRMFLGSVSNYCTNHAMCPVIIVKGKLS 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 989031 990682 - Bma014563.2 Bma02g00108 77358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00108 169 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 167 - -
Bma02g00108 169 CDD USP_Like 8 164 - -
Bma02g00108 169 PANTHER OS02G0760500 PROTEIN 3 166 - -
Bma02g00108 169 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 3 166 - -
Bma02g00108 169 PRINTS Universal stress protein signature 125 137 IPR006015 -
Bma02g00108 169 PRINTS Universal stress protein signature 5 23 IPR006015 -
Bma02g00108 169 PRINTS Universal stress protein signature 143 165 IPR006015 -
Bma02g00108 169 Gene3D HUPs 1 168 IPR014729 -
Bma02g00108 169 Pfam Universal stress protein family 8 165 IPR006016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00108 - - - qsu:112004836 275.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00108 Bma-Chr2:989031 Bma15g00540 Bma-Chr15:6268476 1.27E-27 dispersed
Bma14g01499 Bma-Chr14:30269767 Bma02g00108 Bma-Chr2:989031 6.58E-17 dispersed
Bma04g00513 Bma-Chr4:4541172 Bma02g00108 Bma-Chr2:989031 1.47E-31 transposed
Bma01g01370 Bma-Chr1:20959361 Bma02g00108 Bma-Chr2:989031 5.56E-97 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g498 . . Bda01g00914 . . . . . . Cmo12g00148 . . . Car12g00175 . . Cpe07g00163 . . . . . . . . . . . . . . . Cone7ag0852 . . . . . . . . . . Bpe02g01155 . . Bma02g00108 . . . Cma12g00194 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004387 2 3 2 2 2 2 2 1 1 1 1 0 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 2 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00108 Bma_Chr02 FPKM 41.311523 48.294739 44.086414 44.811203 42.57695 46.639477 42.448143 60.397179 55.858257 52.867237