Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00110 ATGAAAGGTGAGTACGCGCCGCAGAAAAACGACACCCATAATATCTTCTCTAAGCTTCAAAACCGCCATGGCCACCACGACCAACCGCAGCTTCAAACCCACTTGTTTTCCAATCCATTCCATCTCTCTGCCACCAGAGAATGCCATACCCCAGAAGAAGACGATAATAGTCGCAGCACTGGACCACCGGCCGCCACAATAACTCAAACCAAATTACCCCTAGAGCTCAGCTCCGGTGACGGAGCAACTCTAGAGGTCGTAAGGCGCCCGAGGGGCCGCCCAGCCGGTTCGAAAAACAAACCAAAAACGCCCGTCATCATAAACCAAGTCACCGAGCCCGCTATGAGCCCTTACATTCTTGAAGTCCCCGGCGGTAACGACGTAGTGGAAGCCATTGCCCACTTTTCTCGACGGAAAAATATGGGTCTCTGCGTCCTCAGTGGCTCCGGAACAGTGGCAAATGTAACTCTACGGCAACCATCGAGCCCCCCTGGAGCAACCGTTACCTTCCATGGCCGCTTCGAGATCTTATCGATTTCCGCCACCTTCCTCCCTCATACGATGTCATACCCTGTCCCGAAGGAATTCGCCATCTCTCTCTCAGGCCCTCAGGGTCAAATCATTGGCGGTTTAGTTACTGGGTCTCTCGTTGCAGTTGGGGCAGTGTACGTTATCGCGGCTTCTTTTAACAACCCTTCCTATCATCGGCTGCCGGACGAAGATGAGGTGAGAAACTCAGTTTCAGGGGGTGAAGGGCAATCTCCGCCTGTTTCGTGCGGCGGAGAGAGTGGTGGGCCACGCTCCTGTGGAGTCATGTGTGATGCCCAGGTATAG 834 53.96 MKGEYAPQKNDTHNIFSKLQNRHGHHDQPQLQTHLFSNPFHLSATRECHTPEEDDNSRSTGPPAATITQTKLPLELSSGDGATLEVVRRPRGRPAGSKNKPKTPVIINQVTEPAMSPYILEVPGGNDVVEAIAHFSRRKNMGLCVLSGSGTVANVTLRQPSSPPGATVTFHGRFEILSISATFLPHTMSYPVPKEFAISLSGPQGQIIGGLVTGSLVAVGAVYVIAASFNNPSYHRLPDEDEVRNSVSGGEGQSPPVSCGGESGGPRSCGVMCDAQV 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1002028 1002861 - Bma014565.1 Bma02g00110 77360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00110 277 MobiDBLite consensus disorder prediction 47 103 - -
Bma02g00110 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 241 - -
Bma02g00110 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 117 231 IPR005175 -
Bma02g00110 277 Gene3D - 116 248 - -
Bma02g00110 277 ProSiteProfiles PPC domain profile profile. 112 250 IPR005175 -
Bma02g00110 277 MobiDBLite consensus disorder prediction 57 76 - -
Bma02g00110 277 MobiDBLite consensus disorder prediction 237 266 - -
Bma02g00110 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 260 IPR014476 GO:0003680
Bma02g00110 277 CDD DUF296 117 229 IPR005175 -
Bma02g00110 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17-RELATED 34 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00110 Bma-Chr2:1002028 Bma02g01165 Bma-Chr2:53776721 1.73E-51 dispersed
Bma11g00305 Bma-Chr11:2870731 Bma02g00110 Bma-Chr2:1002028 1.37E-45 transposed
Bma01g02587 Bma-Chr1:83506095 Bma02g00110 Bma-Chr2:1002028 5.85E-94 wgd
Bma02g00110 Bma-Chr2:1002028 Bma04g00433 Bma-Chr4:3552874 1.04E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00110 - - zju:107421268 347.051