Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00111 ATGTTTCCTTTTCAGAGCTCTACCTATCCGAACTGGTTGAATCTTAATGAAAACATTCACGATACGAACGCGTCGATCAACTCGGTCGACGCCATCGATTATTCAAACTCGGGCTCTACGATGATGATGAAGACGAGGAAGTCGATGGATGCATGCAGGAGTCATAAAGAAGCAGAGAGAAAGCGCAGGCAGCGAATCAATGCTCACCTCTCCACCCTACGGAGCCTTCTTCCGAACTCCACCAAGACAGATAAGGCATCGCTGCTGGAGGAAGTAGTGAGCCACGTGAAGAAGCTGAGAAGAGACCTTTCCAAAAACAGCGGCCGCGAATCGGAGGCATGGCTGTTCCCGACGGAGTCGGACGAAGTGAATCTGAGTTTCTGCGACGATGAAGCCAAGCTAATGAAAGCGATCGTCTGCTGTGAAGACAGGCCCGGTCTGGTCCTGGATTTGACGCAAGCAATTCGGTCTGTCCGAGCCAGAGCGGTCCGGGCTGAGATGATGACAGTTGGCGGACGGACAAAAAATGTGGTGGTGTTGAAGTGGACCGAAGGTGTCTGTGGCGGAGAAGATGTTGTCGCCCTCAAGCGGGCCTTGAAGGCCGTGGTCGAGAACAGAATTTCGGATCCTCCCGTGACCCGAAATCTTTGGAGCAACAAGCGGGCTCGGATTTATAATAGCTTAATTTAA 690 51.74 MFPFQSSTYPNWLNLNENIHDTNASINSVDAIDYSNSGSTMMMKTRKSMDACRSHKEAERKRRQRINAHLSTLRSLLPNSTKTDKASLLEEVVSHVKKLRRDLSKNSGRESEAWLFPTESDEVNLSFCDDEAKLMKAIVCCEDRPGLVLDLTQAIRSVRARAVRAEMMTVGGRTKNVVVLKWTEGVCGGEDVVALKRALKAVVENRISDPPVTRNLWSNKRARIYNSLI 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1020575 1021356 - Bma014567.1 Bma02g00111 77361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00111 229 SMART finulus 56 105 IPR011598 GO:0046983
Bma02g00111 229 PANTHER OS09G0463900 PROTEIN 36 227 - -
Bma02g00111 229 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 110 IPR036638 GO:0046983
Bma02g00111 229 PANTHER TRANSCRIPTION FACTOR BHLH30 36 227 IPR045847 GO:0003700|GO:0006355
Bma02g00111 229 Gene3D - 44 108 IPR036638 GO:0046983
Bma02g00111 229 SUPERFAMILY ACT-like 138 203 IPR045865 -
Bma02g00111 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 50 99 IPR011598 GO:0046983
Bma02g00111 229 Pfam Helix-loop-helix DNA-binding domain 52 99 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00111 - - - qsu:112026395 237.654
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g01373 Bma02g00111 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00111 Bma-Chr2:1020575 Bma15g00097 Bma-Chr15:1059794 3.06E-37 dispersed
Bma02g00175 Bma-Chr2:1571563 Bma02g00111 Bma-Chr2:1020575 3.00E-169 transposed
Bma01g01373 Bma-Chr1:21241731 Bma02g00111 Bma-Chr2:1020575 1.16E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g504 . . Bda01g00912 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag1448 . . . . . . . . . . Bpe02g01151 . Bma01g01373 Bma02g00111 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007814 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 2 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56845 PF00010 HLH 2.70E-13 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00111 Bma_Chr02 FPKM 2.250334 2.798246 0.123203 0.310426 5.415122 5.261714 4.8345 0.0 0.0 0.0