Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00115 ATGCTATGGCGGCATATGGCATATCGTCATGCTTTGTCTGAGAAGTTGGAAGAGAAAGCGGAACCTCTGGAAGATAATAGTGACCTGGAATATGAATTGGGACCTTTACCAGCTGTGAGTAGTGAGTCTTTGAATGAGGTTGCCGCCTGTGTGAAGGTATTGATTGCTTCTGGCTTTCCAAAAGACTCAAGTGTCCCTAACAGTTCTACCGTTGAGGCTCCTCTAACTATAAATCTATCCTACAATCGATCAACTAGATTAGAAAATTCAGAACCTGCTTGTTCAACGCAAGGGGCATACATTACCATTCCAGTTTCTCTTCAGAGACAGCCTGCCCCTGCACCTTCTTATGTGGAAGGATTAGATGCAAACGTTACAAGTAACGGCATTATGCCTTCCCGAAGAAAAAGAAAACCTTGGTCAGAGGCAGAGGATTTGGAACTGATTGCAGCTGTTCAGAAGTGTGGTGAAGGAAATTGGGCTAATATCTTGCGTGGAGACTTCAAGGGTGATAGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAGGAAGCGTCACAGTAATTTGAATGTGGGAGGCAACTCTACAGGTACACAGCTATCTGAGGACCAAGTCGAAGCTGCTCGTCGTGCAATGTCATTAGCTCTTGATATGCCTGTTAATAATGTTAAAGCAATTTGCACAGTGAACTCAGGTATTCCTCCATTTTTTTTGGGTGAACATTTTCATCTTAATTTTGGTATGGAAATATCTTCCTATTTAAAGACAACAGATAGTAATTGGAACAGAAGTAATATTTACTATGTTACAACGTCTTACATTCAGCCGGTGCTGCTATGGATTGGTGCTACGTTAGTCTGCAGTGCATTAGATCCATTAGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTTTGAATTTTGTACGATCACTGTCAACAGTGCTTGCATTCACCTATTGTTTGTCGAGCTTGATTCAACATGTACAAAAGTTCTTCGTTGAGACCAATGACTCTAGTGAGGCAAGAAATATGGGCTTCGATTTTGCTGGAAAAGCCGTTTATACAGCAGTATGGGTTGCTGCTTTAGCATTGTTCATGGAGTTGCTTGGGTTCTCTACACAAAAGTGGCTAACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATTTTTACAAATTTCCTTTCAAGCGTTATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATTCCAAATCACAAGTTCACTGTTAATATTGTGAGGAATCTTAGCCAGAAGACTCACTGGCGCATCAAGTCTTATCTATCCATCAGCCACTTTGACGTCAATAAGATCAATAATGTTGTAGCGGATATGCGCAAAGTTATAGCAAAAAATCCTCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTATATTGATCCTGAAAATCAAGCTCTCATGGTTCTGATTTCATGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTGTGCGTCAAGGAAGCAATTATCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCACGGCTTGCTACTCCAATTCGCACAGTTCAGAAGATTTACAGAGAGGGTGACTTGGAAGAAATAACTCTTGCCGATACCATATTCTCTCGTTCTACAGCAGCTAATGATCGTCCACTGTTACTCATTGAACCCTTATATAAGATCAATAGTGATGACAAAAAGTCGTCTACTCGTTCCACACGTTCAGACGACGAAAAGGACTCCAAACAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAAACAGATGATAAGAGTGCAGCAAAATCAAATTCTCATTCTGGTCAAAATTTCAAATCTTCACAGGCATCAAAATTGGACTTTCAGATCCAGAATTCGCATCTAGATAATTCAGAAGAGAGAATTCCTGAAATGCCAGTGGTGAAGAGTGGAGTGAGAGGAAAAGACGATGAGAACATGGAATACAAGTCCAATAACACTACCCCTATAGGAGTGACATTGGAAAAGCCCTCTCTTTTGCCAGAATCAGACAGTGAACAAATAGACAAGTCATCTGTTGGTTTCCGTACAAAGCACGATGGTGAAGCCTTTTCAGCATCGCCTGGAGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCAATTGAGGAAGAAATGTCTTCGCCTGCAACACTTGACTCGAGAGAAATGTCTGCCCATCGTACTCCACTTTCGCAAATTAGCGAAGCTAAAGATGGTCAAATACCAACTGTTCCAAATGTGACAAAAAATGATTGA 2475 41.45 MLWRHMAYRHALSEKLEEKAEPLEDNSDLEYELGPLPAVSSESLNEVAACVKVLIASGFPKDSSVPNSSTVEAPLTINLSYNRSTRLENSEPACSTQGAYITIPVSLQRQPAPAPSYVEGLDANVTSNGIMPSRRKRKPWSEAEDLELIAAVQKCGEGNWANILRGDFKGDRTASQLSQRWAIIRKRHSNLNVGGNSTGTQLSEDQVEAARRAMSLALDMPVNNVKAICTVNSGIPPFFLGEHFHLNFGMEISSYLKTTDSNWNRSNIYYVTTSYIQPVLLWIGATLVCSALDPLVLPSEASQAIKQRLLNFVRSLSTVLAFTYCLSSLIQHVQKFFVETNDSSEARNMGFDFAGKAVYTAVWVAALALFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNIVRNLSQKTHWRIKSYLSISHFDVNKINNVVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMVLISCFVKTSHFEEYLCVKEAIILDLLRVISHHRARLATPIRTVQKIYREGDLEEITLADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTRSDDEKDSKQEAASTSNMNASDKTDDKSAAKSNSHSGQNFKSSQASKLDFQIQNSHLDNSEERIPEMPVVKSGVRGKDDENMEYKSNNTTPIGVTLEKPSLLPESDSEQIDKSSVGFRTKHDGEAFSASPGGISMPPLEENILLGVALEGSKRTLPIEEEMSSPATLDSREMSAHRTPLSQISEAKDGQIPTVPNVTKND 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1054805 1065668 - Bma014570.2 Bma02g00115 77365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00115 824 MobiDBLite consensus disorder prediction 779 824 - -
Bma02g00115 824 Pfam Myb-like DNA-binding domain 137 181 IPR001005 -
Bma02g00115 824 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 189 IPR017930 -
Bma02g00115 824 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 255 814 - -
Bma02g00115 824 ProSiteProfiles Myb-like domain profile. 132 181 IPR001005 -
Bma02g00115 824 MobiDBLite consensus disorder prediction 615 672 - -
Bma02g00115 824 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 255 814 IPR045042 -
Bma02g00115 824 MobiDBLite consensus disorder prediction 615 635 - -
Bma02g00115 824 SUPERFAMILY Homeodomain-like 134 186 IPR009057 -
Bma02g00115 824 MobiDBLite consensus disorder prediction 696 721 - -
Bma02g00115 824 MobiDBLite consensus disorder prediction 655 672 - -
Bma02g00115 824 SUPERFAMILY Sm-like ribonucleoproteins 399 469 IPR010920 -
Bma02g00115 824 SMART sant 136 187 IPR001005 -
Bma02g00115 824 MobiDBLite consensus disorder prediction 790 824 - -
Bma02g00115 824 Gene3D - 309 413 - -
Bma02g00115 824 Gene3D - 132 190 - -
Bma02g00115 824 Gene3D - 415 470 IPR023408 -
Bma02g00115 824 CDD SANT_TRF 138 186 - -
Bma02g00115 824 Pfam Mechanosensitive ion channel 356 563 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00115 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101213477 722.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01375 Bma-Chr1:21321220 Bma02g00115 Bma-Chr2:1054805 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g514 . . Bda01g00910 . . . . . . . . . . Car12g00181 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma02g00115 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g01199 . 109 558 Mechanosensitive Ion Channel Family AT4G00290 57.0 4.0e-130 461.8
Bma06g01198 . 191 453 Mechanosensitive Ion Channel Family AT4G00290 55.8 1.6e-78 290.4
Bma02g00115 . 256 813 Mechanosensitive Ion Channel Family AT5G10490 58.3 3.5e-169 592.0
Bma01g01375 . 11 511 Mechanosensitive Ion Channel Family AT5G10490 59.5 3.5e-153 538.9
Bma02g00115 . 257 796 Mechanosensitive Ion Channel Family AT1G58200 55.7 4.8e-158 555.1
Bma01g01375 . 11 518 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-150 528.5
Bma12g00910 . 63 921 Mechanosensitive Ion Channel Family AT1G53470 54.2 2.9e-248 855.1
Bma03g00619 . 73 896 Mechanosensitive Ion Channel Family AT1G53470 55.9 6.0e-246 847.4
Bma12g00910 . 63 924 Mechanosensitive Ion Channel Family AT3G14810 52.6 3.0e-234 808.5
Bma03g00619 . 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.6 2.1e-227 785.8
Bma12g00910 . 63 922 Mechanosensitive Ion Channel Family AT1G78610 60.9 2.1e-280 961.8
Bma03g00619 . 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 2.5e-260 895.2
Bma12g00910 . 228 918 Mechanosensitive Ion Channel Family AT2G17000 59.8 3.3e-225 778.5
Bma03g00619 . 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.9 9.6e-225 776.9
Bma04g00115 . 16 775 Mechanosensitive Ion Channel Family AT5G19520 50.2 1.4e-195 679.9
Bma04g00115 . 61 775 Mechanosensitive Ion Channel Family AT5G12080 56.1 1.2e-210 729.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021307 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56846 PF00924 MS_channel 6.50E-29 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00115 Bma_Chr02 FPKM 13.226629 11.071555 15.597019 15.519977 5.722887 6.187731 5.033846 101.89502 103.370842 105.436745