Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma02g00115 | ATGCTATGGCGGCATATGGCATATCGTCATGCTTTGTCTGAGAAGTTGGAAGAGAAAGCGGAACCTCTGGAAGATAATAGTGACCTGGAATATGAATTGGGACCTTTACCAGCTGTGAGTAGTGAGTCTTTGAATGAGGTTGCCGCCTGTGTGAAGGTATTGATTGCTTCTGGCTTTCCAAAAGACTCAAGTGTCCCTAACAGTTCTACCGTTGAGGCTCCTCTAACTATAAATCTATCCTACAATCGATCAACTAGATTAGAAAATTCAGAACCTGCTTGTTCAACGCAAGGGGCATACATTACCATTCCAGTTTCTCTTCAGAGACAGCCTGCCCCTGCACCTTCTTATGTGGAAGGATTAGATGCAAACGTTACAAGTAACGGCATTATGCCTTCCCGAAGAAAAAGAAAACCTTGGTCAGAGGCAGAGGATTTGGAACTGATTGCAGCTGTTCAGAAGTGTGGTGAAGGAAATTGGGCTAATATCTTGCGTGGAGACTTCAAGGGTGATAGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAGGAAGCGTCACAGTAATTTGAATGTGGGAGGCAACTCTACAGGTACACAGCTATCTGAGGACCAAGTCGAAGCTGCTCGTCGTGCAATGTCATTAGCTCTTGATATGCCTGTTAATAATGTTAAAGCAATTTGCACAGTGAACTCAGGTATTCCTCCATTTTTTTTGGGTGAACATTTTCATCTTAATTTTGGTATGGAAATATCTTCCTATTTAAAGACAACAGATAGTAATTGGAACAGAAGTAATATTTACTATGTTACAACGTCTTACATTCAGCCGGTGCTGCTATGGATTGGTGCTACGTTAGTCTGCAGTGCATTAGATCCATTAGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTTTGAATTTTGTACGATCACTGTCAACAGTGCTTGCATTCACCTATTGTTTGTCGAGCTTGATTCAACATGTACAAAAGTTCTTCGTTGAGACCAATGACTCTAGTGAGGCAAGAAATATGGGCTTCGATTTTGCTGGAAAAGCCGTTTATACAGCAGTATGGGTTGCTGCTTTAGCATTGTTCATGGAGTTGCTTGGGTTCTCTACACAAAAGTGGCTAACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATTTTTACAAATTTCCTTTCAAGCGTTATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATTCCAAATCACAAGTTCACTGTTAATATTGTGAGGAATCTTAGCCAGAAGACTCACTGGCGCATCAAGTCTTATCTATCCATCAGCCACTTTGACGTCAATAAGATCAATAATGTTGTAGCGGATATGCGCAAAGTTATAGCAAAAAATCCTCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTATATTGATCCTGAAAATCAAGCTCTCATGGTTCTGATTTCATGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTGTGCGTCAAGGAAGCAATTATCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCACGGCTTGCTACTCCAATTCGCACAGTTCAGAAGATTTACAGAGAGGGTGACTTGGAAGAAATAACTCTTGCCGATACCATATTCTCTCGTTCTACAGCAGCTAATGATCGTCCACTGTTACTCATTGAACCCTTATATAAGATCAATAGTGATGACAAAAAGTCGTCTACTCGTTCCACACGTTCAGACGACGAAAAGGACTCCAAACAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAAACAGATGATAAGAGTGCAGCAAAATCAAATTCTCATTCTGGTCAAAATTTCAAATCTTCACAGGCATCAAAATTGGACTTTCAGATCCAGAATTCGCATCTAGATAATTCAGAAGAGAGAATTCCTGAAATGCCAGTGGTGAAGAGTGGAGTGAGAGGAAAAGACGATGAGAACATGGAATACAAGTCCAATAACACTACCCCTATAGGAGTGACATTGGAAAAGCCCTCTCTTTTGCCAGAATCAGACAGTGAACAAATAGACAAGTCATCTGTTGGTTTCCGTACAAAGCACGATGGTGAAGCCTTTTCAGCATCGCCTGGAGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCAATTGAGGAAGAAATGTCTTCGCCTGCAACACTTGACTCGAGAGAAATGTCTGCCCATCGTACTCCACTTTCGCAAATTAGCGAAGCTAAAGATGGTCAAATACCAACTGTTCCAAATGTGACAAAAAATGATTGA | 2475 | 41.45 | MLWRHMAYRHALSEKLEEKAEPLEDNSDLEYELGPLPAVSSESLNEVAACVKVLIASGFPKDSSVPNSSTVEAPLTINLSYNRSTRLENSEPACSTQGAYITIPVSLQRQPAPAPSYVEGLDANVTSNGIMPSRRKRKPWSEAEDLELIAAVQKCGEGNWANILRGDFKGDRTASQLSQRWAIIRKRHSNLNVGGNSTGTQLSEDQVEAARRAMSLALDMPVNNVKAICTVNSGIPPFFLGEHFHLNFGMEISSYLKTTDSNWNRSNIYYVTTSYIQPVLLWIGATLVCSALDPLVLPSEASQAIKQRLLNFVRSLSTVLAFTYCLSSLIQHVQKFFVETNDSSEARNMGFDFAGKAVYTAVWVAALALFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNIVRNLSQKTHWRIKSYLSISHFDVNKINNVVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMVLISCFVKTSHFEEYLCVKEAIILDLLRVISHHRARLATPIRTVQKIYREGDLEEITLADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTRSDDEKDSKQEAASTSNMNASDKTDDKSAAKSNSHSGQNFKSSQASKLDFQIQNSHLDNSEERIPEMPVVKSGVRGKDDENMEYKSNNTTPIGVTLEKPSLLPESDSEQIDKSSVGFRTKHDGEAFSASPGGISMPPLEENILLGVALEGSKRTLPIEEEMSSPATLDSREMSAHRTPLSQISEAKDGQIPTVPNVTKND | 824 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1054805 | 1065668 | - | Bma014570.2 | Bma02g00115 | 77365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma02g00115 | 824 | MobiDBLite | consensus disorder prediction | 779 | 824 | - | - | |
Bma02g00115 | 824 | Pfam | Myb-like DNA-binding domain | 137 | 181 | IPR001005 | - | |
Bma02g00115 | 824 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 134 | 189 | IPR017930 | - | |
Bma02g00115 | 824 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC | 255 | 814 | - | - | |
Bma02g00115 | 824 | ProSiteProfiles | Myb-like domain profile. | 132 | 181 | IPR001005 | - | |
Bma02g00115 | 824 | MobiDBLite | consensus disorder prediction | 615 | 672 | - | - | |
Bma02g00115 | 824 | PANTHER | OW CONDUCTANCE MECHANOSENSITIVE CHANNEL | 255 | 814 | IPR045042 | - | |
Bma02g00115 | 824 | MobiDBLite | consensus disorder prediction | 615 | 635 | - | - | |
Bma02g00115 | 824 | SUPERFAMILY | Homeodomain-like | 134 | 186 | IPR009057 | - | |
Bma02g00115 | 824 | MobiDBLite | consensus disorder prediction | 696 | 721 | - | - | |
Bma02g00115 | 824 | MobiDBLite | consensus disorder prediction | 655 | 672 | - | - | |
Bma02g00115 | 824 | SUPERFAMILY | Sm-like ribonucleoproteins | 399 | 469 | IPR010920 | - | |
Bma02g00115 | 824 | SMART | sant | 136 | 187 | IPR001005 | - | |
Bma02g00115 | 824 | MobiDBLite | consensus disorder prediction | 790 | 824 | - | - | |
Bma02g00115 | 824 | Gene3D | - | 309 | 413 | - | - | |
Bma02g00115 | 824 | Gene3D | - | 132 | 190 | - | - | |
Bma02g00115 | 824 | Gene3D | - | 415 | 470 | IPR023408 | - | |
Bma02g00115 | 824 | CDD | SANT_TRF | 138 | 186 | - | - | |
Bma02g00115 | 824 | Pfam | Mechanosensitive ion channel | 356 | 563 | IPR006685 | GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01375 | Bma-Chr1:21321220 | Bma02g00115 | Bma-Chr2:1054805 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
56846 | PF00924 | MS_channel | 6.50E-29 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma02g00115 | K22047 | - | csv:101213477 | 722.235 |