Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00115 ATGCTATGGCGGCATATGGCATATCGTCATGCTTTGTCTGAGAAGTTGGAAGAGAAAGCGGAACCTCTGGAAGATAATAGTGACCTGGAATATGAATTGGGACCTTTACCAGCTGTGAGTAGTGAGTCTTTGAATGAGGTTGCCGCCTGTGTGAAGGTATTGATTGCTTCTGGCTTTCCAAAAGACTCAAGTGTCCCTAACAGTTCTACCGTTGAGGCTCCTCTAACTATAAATCTATCCTACAATCGATCAACTAGATTAGAAAATTCAGAACCTGCTTGTTCAACGCAAGGGGCATACATTACCATTCCAGTTTCTCTTCAGAGACAGCCTGCCCCTGCACCTTCTTATGTGGAAGGATTAGATGCAAACGTTACAAGTAACGGCATTATGCCTTCCCGAAGAAAAAGAAAACCTTGGTCAGAGGCAGAGGATTTGGAACTGATTGCAGCTGTTCAGAAGTGTGGTGAAGGAAATTGGGCTAATATCTTGCGTGGAGACTTCAAGGGTGATAGAACTGCTTCACAGCTATCTCAGAGATGGGCAATTATTAGGAAGCGTCACAGTAATTTGAATGTGGGAGGCAACTCTACAGGTACACAGCTATCTGAGGACCAAGTCGAAGCTGCTCGTCGTGCAATGTCATTAGCTCTTGATATGCCTGTTAATAATGTTAAAGCAATTTGCACAGTGAACTCAGGTATTCCTCCATTTTTTTTGGGTGAACATTTTCATCTTAATTTTGGTATGGAAATATCTTCCTATTTAAAGACAACAGATAGTAATTGGAACAGAAGTAATATTTACTATGTTACAACGTCTTACATTCAGCCGGTGCTGCTATGGATTGGTGCTACGTTAGTCTGCAGTGCATTAGATCCATTAGTCCTACCTTCAGAAGCCAGCCAAGCAATTAAACAGAGACTTTTGAATTTTGTACGATCACTGTCAACAGTGCTTGCATTCACCTATTGTTTGTCGAGCTTGATTCAACATGTACAAAAGTTCTTCGTTGAGACCAATGACTCTAGTGAGGCAAGAAATATGGGCTTCGATTTTGCTGGAAAAGCCGTTTATACAGCAGTATGGGTTGCTGCTTTAGCATTGTTCATGGAGTTGCTTGGGTTCTCTACACAAAAGTGGCTAACTGCTGGGGGTCTTGGTACAGTATTACTCACCCTTGCTGGTCGTGAGATTTTTACAAATTTCCTTTCAAGCGTTATGATTCATGCTACCAGGCCATTTGTTCTGAATGAGTGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGTACAGTAGAGCATGTGGGTTGGTGGTCACCAACAATTATCAGAGGTGATGATCGAGAAGCAGTTCATATTCCAAATCACAAGTTCACTGTTAATATTGTGAGGAATCTTAGCCAGAAGACTCACTGGCGCATCAAGTCTTATCTATCCATCAGCCACTTTGACGTCAATAAGATCAATAATGTTGTAGCGGATATGCGCAAAGTTATAGCAAAAAATCCTCAAGTTGAGCAGCAAAGGTTACACAGGAGAGTTTTTCTGGATTATATTGATCCTGAAAATCAAGCTCTCATGGTTCTGATTTCATGCTTTGTGAAAACCTCTCATTTTGAAGAGTACCTGTGCGTCAAGGAAGCAATTATCTTAGATCTTCTCAGAGTCATCAGCCATCATCGTGCACGGCTTGCTACTCCAATTCGCACAGTTCAGAAGATTTACAGAGAGGGTGACTTGGAAGAAATAACTCTTGCCGATACCATATTCTCTCGTTCTACAGCAGCTAATGATCGTCCACTGTTACTCATTGAACCCTTATATAAGATCAATAGTGATGACAAAAAGTCGTCTACTCGTTCCACACGTTCAGACGACGAAAAGGACTCCAAACAAGAAGCAGCATCCACATCTAATATGAATGCCTCTGACAAAACAGATGATAAGAGTGCAGCAAAATCAAATTCTCATTCTGGTCAAAATTTCAAATCTTCACAGGCATCAAAATTGGACTTTCAGATCCAGAATTCGCATCTAGATAATTCAGAAGAGAGAATTCCTGAAATGCCAGTGGTGAAGAGTGGAGTGAGAGGAAAAGACGATGAGAACATGGAATACAAGTCCAATAACACTACCCCTATAGGAGTGACATTGGAAAAGCCCTCTCTTTTGCCAGAATCAGACAGTGAACAAATAGACAAGTCATCTGTTGGTTTCCGTACAAAGCACGATGGTGAAGCCTTTTCAGCATCGCCTGGAGGAATATCAATGCCTCCATTGGAAGAGAACATACTTCTAGGTGTTGCTTTGGAAGGATCAAAAAGAACACTTCCAATTGAGGAAGAAATGTCTTCGCCTGCAACACTTGACTCGAGAGAAATGTCTGCCCATCGTACTCCACTTTCGCAAATTAGCGAAGCTAAAGATGGTCAAATACCAACTGTTCCAAATGTGACAAAAAATGATTGA 2475 41.45 MLWRHMAYRHALSEKLEEKAEPLEDNSDLEYELGPLPAVSSESLNEVAACVKVLIASGFPKDSSVPNSSTVEAPLTINLSYNRSTRLENSEPACSTQGAYITIPVSLQRQPAPAPSYVEGLDANVTSNGIMPSRRKRKPWSEAEDLELIAAVQKCGEGNWANILRGDFKGDRTASQLSQRWAIIRKRHSNLNVGGNSTGTQLSEDQVEAARRAMSLALDMPVNNVKAICTVNSGIPPFFLGEHFHLNFGMEISSYLKTTDSNWNRSNIYYVTTSYIQPVLLWIGATLVCSALDPLVLPSEASQAIKQRLLNFVRSLSTVLAFTYCLSSLIQHVQKFFVETNDSSEARNMGFDFAGKAVYTAVWVAALALFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNIVRNLSQKTHWRIKSYLSISHFDVNKINNVVADMRKVIAKNPQVEQQRLHRRVFLDYIDPENQALMVLISCFVKTSHFEEYLCVKEAIILDLLRVISHHRARLATPIRTVQKIYREGDLEEITLADTIFSRSTAANDRPLLLIEPLYKINSDDKKSSTRSTRSDDEKDSKQEAASTSNMNASDKTDDKSAAKSNSHSGQNFKSSQASKLDFQIQNSHLDNSEERIPEMPVVKSGVRGKDDENMEYKSNNTTPIGVTLEKPSLLPESDSEQIDKSSVGFRTKHDGEAFSASPGGISMPPLEENILLGVALEGSKRTLPIEEEMSSPATLDSREMSAHRTPLSQISEAKDGQIPTVPNVTKND 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1054805 1065668 - Bma014570.2 Bma02g00115 77365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00115 824 MobiDBLite consensus disorder prediction 779 824 - -
Bma02g00115 824 Pfam Myb-like DNA-binding domain 137 181 IPR001005 -
Bma02g00115 824 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 189 IPR017930 -
Bma02g00115 824 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 255 814 - -
Bma02g00115 824 ProSiteProfiles Myb-like domain profile. 132 181 IPR001005 -
Bma02g00115 824 MobiDBLite consensus disorder prediction 615 672 - -
Bma02g00115 824 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 255 814 IPR045042 -
Bma02g00115 824 MobiDBLite consensus disorder prediction 615 635 - -
Bma02g00115 824 SUPERFAMILY Homeodomain-like 134 186 IPR009057 -
Bma02g00115 824 MobiDBLite consensus disorder prediction 696 721 - -
Bma02g00115 824 MobiDBLite consensus disorder prediction 655 672 - -
Bma02g00115 824 SUPERFAMILY Sm-like ribonucleoproteins 399 469 IPR010920 -
Bma02g00115 824 SMART sant 136 187 IPR001005 -
Bma02g00115 824 MobiDBLite consensus disorder prediction 790 824 - -
Bma02g00115 824 Gene3D - 309 413 - -
Bma02g00115 824 Gene3D - 132 190 - -
Bma02g00115 824 Gene3D - 415 470 IPR023408 -
Bma02g00115 824 CDD SANT_TRF 138 186 - -
Bma02g00115 824 Pfam Mechanosensitive ion channel 356 563 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01375 Bma-Chr1:21321220 Bma02g00115 Bma-Chr2:1054805 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56846 PF00924 MS_channel 6.50E-29 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00115 K22047 - csv:101213477 722.235