Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00116 ATGGCGGCTGCGAATCCTCAGCCTCTGCAGAGCCGTCCCTTCGACGAACATGTACGTGGTCTTATAACGATTGGAGAGGAAGACGACGACTACGAAGATGGAAGTGGCGATGCTCTGGATGATGTCCAGGATGCTCATATGAATTCGGTTAGCGTCGTTAACCATGGTGGATTACAGGTTGCGTCAAGGACTAGCGAACTTACGCTCTCTTTTGAAGGCGAGGTCTATGTCTTTCCCGCCGTAACGCCTGAAAAGGTGCAGGCAGTGCTTTTGCTTTTGGGGGGTCGTGATTTGCCAAGTGGCATGCCCGCGGTTGAAGTACCTTATGATCAAAGTAACAGGGTAGTTATGGACCCTCCAAAACGCTCAAATCTGTCACGAAGAATAGCTTCCCTGGTTAGGTTTCGAGAAAAGCGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACTGTACGAAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGTCAGTTTGCATCATTGAAAGAAAATTCGGGTGCTTCAAGTTGGGATTCTGCAGAAAATGGCCCACAAGATGGTATTCGTTCAGAAACTGTTCTACGGAGATGTCAGCATTGTGGTGTTAATGAAAGTAATACTCCTGCAATGCGCCGCGGTCCGGCTGGACCAAGGACATTATGCAATGCGTGTGGTCTGATGTGGGCAAATAAAGGTACTTTGAGAGATCTCAGCAAGGGTGGAAGGAGTATTTCTGTTGAACCCGAATCGTCAATGGATATCAAGCCTTCTATAACAGAACCAGAGGTTTCTGATTACCAGGATGATCGTGGACCAGAGGATCCTGGTAAGGCTGTAACAGAAGGTTCTAGTAATCCTTCTGTCCACCAACATCACGAAAATTTGCACGAAGATCTTATGGACTCTTTGCCCAAGCAAATGGACCATTCTTCAGGGAATGATGATGAACAGGAACAGGAACCATTGGGTGAACTTGGTAATACTATGGATACAGAGTTAGATATCCCTGCTAACTTTGTTTAG 1029 46.26 MAAANPQPLQSRPFDEHVRGLITIGEEDDDYEDGSGDALDDVQDAHMNSVSVVNHGGLQVASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDLPSGMPAVEVPYDQSNRVVMDPPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKENSGASSWDSAENGPQDGIRSETVLRRCQHCGVNESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSISVEPESSMDIKPSITEPEVSDYQDDRGPEDPGKAVTEGSSNPSVHQHHENLHEDLMDSLPKQMDHSSGNDDEQEQEPLGELGNTMDTELDIPANFV 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1077281 1080895 + Bma014571.1 Bma02g00116 77366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00116 342 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
Bma02g00116 342 CDD ZnF_GATA 198 245 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 Pfam tify domain 63 94 IPR010399 -
Bma02g00116 342 PANTHER GATA TRANSCRIPTION FACTOR 28 1 341 IPR045280 GO:0006355
Bma02g00116 342 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Bma02g00116 342 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 246 - -
Bma02g00116 342 MobiDBLite consensus disorder prediction 167 188 - -
Bma02g00116 342 Pfam CCT motif 128 169 IPR010402 GO:0005515
Bma02g00116 342 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 ProSiteProfiles GATA-type zinc finger domain profile. 193 249 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 MobiDBLite consensus disorder prediction 264 278 - -
Bma02g00116 342 Gene3D - 191 249 IPR013088 GO:0006355|GO:0008270
Bma02g00116 342 SMART tify_2 60 95 IPR010399 -
Bma02g00116 342 MobiDBLite consensus disorder prediction 163 190 - -
Bma02g00116 342 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 341 - -
Bma02g00116 342 MobiDBLite consensus disorder prediction 237 342 - -
Bma02g00116 342 MobiDBLite consensus disorder prediction 292 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00116 Bma-Chr2:1077281 Bma12g00332 Bma-Chr12:5430937 3.15E-71 dispersed
Bma02g00116 Bma-Chr2:1077281 Bma01g02579 Bma-Chr1:83419158 1.52E-139 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56847 PF06203 CCT 1.30E-13 CL0281 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00116 - - mcha:111004894 492.656