Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00116 ATGGCGGCTGCGAATCCTCAGCCTCTGCAGAGCCGTCCCTTCGACGAACATGTACGTGGTCTTATAACGATTGGAGAGGAAGACGACGACTACGAAGATGGAAGTGGCGATGCTCTGGATGATGTCCAGGATGCTCATATGAATTCGGTTAGCGTCGTTAACCATGGTGGATTACAGGTTGCGTCAAGGACTAGCGAACTTACGCTCTCTTTTGAAGGCGAGGTCTATGTCTTTCCCGCCGTAACGCCTGAAAAGGTGCAGGCAGTGCTTTTGCTTTTGGGGGGTCGTGATTTGCCAAGTGGCATGCCCGCGGTTGAAGTACCTTATGATCAAAGTAACAGGGTAGTTATGGACCCTCCAAAACGCTCAAATCTGTCACGAAGAATAGCTTCCCTGGTTAGGTTTCGAGAAAAGCGAAAGGAAAGATGTTTTGACAAGAAAATTAGGTATACTGTACGAAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGTCAGTTTGCATCATTGAAAGAAAATTCGGGTGCTTCAAGTTGGGATTCTGCAGAAAATGGCCCACAAGATGGTATTCGTTCAGAAACTGTTCTACGGAGATGTCAGCATTGTGGTGTTAATGAAAGTAATACTCCTGCAATGCGCCGCGGTCCGGCTGGACCAAGGACATTATGCAATGCGTGTGGTCTGATGTGGGCAAATAAAGGTACTTTGAGAGATCTCAGCAAGGGTGGAAGGAGTATTTCTGTTGAACCCGAATCGTCAATGGATATCAAGCCTTCTATAACAGAACCAGAGGTTTCTGATTACCAGGATGATCGTGGACCAGAGGATCCTGGTAAGGCTGTAACAGAAGGTTCTAGTAATCCTTCTGTCCACCAACATCACGAAAATTTGCACGAAGATCTTATGGACTCTTTGCCCAAGCAAATGGACCATTCTTCAGGGAATGATGATGAACAGGAACAGGAACCATTGGGTGAACTTGGTAATACTATGGATACAGAGTTAGATATCCCTGCTAACTTTGTTTAG 1029 46.26 MAAANPQPLQSRPFDEHVRGLITIGEEDDDYEDGSGDALDDVQDAHMNSVSVVNHGGLQVASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDLPSGMPAVEVPYDQSNRVVMDPPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKENSGASSWDSAENGPQDGIRSETVLRRCQHCGVNESNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRSISVEPESSMDIKPSITEPEVSDYQDDRGPEDPGKAVTEGSSNPSVHQHHENLHEDLMDSLPKQMDHSSGNDDEQEQEPLGELGNTMDTELDIPANFV 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1077281 1080895 + Bma014571.1 Bma02g00116 77366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00116 342 ProSiteProfiles CCT domain profile. 128 170 IPR010402 GO:0005515
Bma02g00116 342 CDD ZnF_GATA 198 245 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 Pfam tify domain 63 94 IPR010399 -
Bma02g00116 342 PANTHER GATA TRANSCRIPTION FACTOR 28 1 341 IPR045280 GO:0006355
Bma02g00116 342 ProSiteProfiles Tify domain profile. 60 95 IPR010399 -
Bma02g00116 342 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 246 - -
Bma02g00116 342 MobiDBLite consensus disorder prediction 167 188 - -
Bma02g00116 342 Pfam CCT motif 128 169 IPR010402 GO:0005515
Bma02g00116 342 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 ProSiteProfiles GATA-type zinc finger domain profile. 193 249 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Bma02g00116 342 MobiDBLite consensus disorder prediction 264 278 - -
Bma02g00116 342 Gene3D - 191 249 IPR013088 GO:0006355|GO:0008270
Bma02g00116 342 SMART tify_2 60 95 IPR010399 -
Bma02g00116 342 MobiDBLite consensus disorder prediction 163 190 - -
Bma02g00116 342 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 341 - -
Bma02g00116 342 MobiDBLite consensus disorder prediction 237 342 - -
Bma02g00116 342 MobiDBLite consensus disorder prediction 292 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00116 - - - mcha:111004894 492.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00116 Bma-Chr2:1077281 Bma12g00332 Bma-Chr12:5430937 3.15E-71 dispersed
Bma02g00116 Bma-Chr2:1077281 Bma01g02579 Bma-Chr1:83419158 1.52E-139 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g531 . . . Bda03g00450 Bpe02g00145 . . . Cmo05g00561 . . . . Car12g00188 . . . Bhi04g01395 Tan02g2468 . . Hepe10g0439 . . . . . . . . . . . . . . . . . . . Bda11g00806 . . . . Bma02g00116 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01015 Csa02g02198 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g00427 BCT 3109 3325 Tify Gene Family AT4G24470 54.1 1.5e-50 196.8
Bma12g00332 . 93 300 Tify Gene Family AT1G51600 58.6 2.5e-58 222.6
Bma02g00116 . 25 241 Tify Gene Family AT1G51600 53.5 3.5e-52 202.2
Bma01g02579 BCT 68 246 Tify Gene Family AT1G51600 60.8 4.4e-47 185.3
Bma04g00427 BCT 3136 3310 Tify Gene Family AT1G51600 55.1 1.2e-39 160.6
Bma04g00427 BCT 3109 3325 Tify Gene Family AT4G24470 54.1 1.5e-50 196.8
Bma12g00332 . 93 300 Tify Gene Family AT1G51600 58.6 2.5e-58 222.6
Bma02g00116 . 25 241 Tify Gene Family AT1G51600 53.5 3.5e-52 202.2
Bma01g02579 BCT 68 246 Tify Gene Family AT1G51600 60.8 4.4e-47 185.3
Bma04g00427 BCT 3136 3310 Tify Gene Family AT1G51600 55.1 1.2e-39 160.6
Bma05g01092 CCT 1 184 Tify Gene Family AT4G14720 52.8 7.2e-43 171.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56847 PF06203 CCT 1.30E-13 CL0281 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00116 Bma_Chr02 FPKM 7.35958 8.949515 9.398121 8.402923 2.49238 2.492754 2.75094 53.579044 49.209572 60.00145