Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00119 ATGGATAATGGCATCGTCCAAGTGACACTATCGAACCCAGATGGAATTGTCACTGGGATTTCATTTAATGGGATTGACAACCTGCTGGAAGTTCTTAACGACGAATCAAATAGAGGGTATTTCCTGCAATTACTAACCCGATATATGTATAATGATATTAACTATATGATCAAGGGGACAGATTTCAAAATTATAGTGCAGAATGAAGAACAGGTGGAGCTGTCTTTCACAAGATCATGGGATGTCTCCCTTGAGGGCAAGCTCGTACCTTTAAACATTGATAAAAGGTTCATTATGCTTAGGGGTTCTTCTGGGTTTTACTCCTACGCCATTTATGAACACTTGAAAGAATGGCCTGGTTTCAATCTAGATGAAACCAGAATCGCATTCAAACTCAGAAAAGACATGTTTCATTATATGGCCATAGCAGACGACAGGCAACGATACATGCCTCTCCCTGACGATCGCTTGCCGTCAAGAGGCCAAGCTCTTGCCTATCCAGAGGCTGTTCTTCTTCTCAATCCCGTGGAGCCTGAGTTTAAAGGAGAGGTGGACGATAAGTACCAGTATTCTTGTGACAACAAAGATCTTCGAGTTCATGGTTGGATATCCACAGACCCACCGGTCGGATTTTGGCAAATCACGGCCAGTGACGAGTTCCGGTCTGGAGGACCCGTCAAACAGAATCTGACGTCACATGTCGGCCCGACCACCCTCGCCAATATAAAGTACAATGCACGTATAAATAATGTATGTTTGATTCAAATTGTCCTATGCGCGCAGATGTTTCTCAGCGCTCACTATTCGGGATTAGATTTGGTGCCCAAATTTGGGTCAGGGGAGACTTGGAAGAAAGTTTTTGGCCCTGTTTTTATCTACCTAAACTCTGTTTTCAACGGTGACGACCCATTTCTGCTCTGGGATGATGCCAAATTACAGATGATGATGGAAGTACAGAGCTGGCCGTATTCCTTCGTGTCGTCGGAGGACTTTCCGGCATCGGACCAGAGGGGTAATCTCAGAGGCAGGCTACTTATCCTAGACAGGTACATTTGCGGCGACTGTATTGCAGCAAATGGTGCTTACGTTGGCCTAGCTCCTCCAGGAGATGCTGGTTCTTGGCAAAGAGAATGCAAGGAGTATCAATTTTGGACGAGAGCGGATGAAGAAGGTTGCTTTTCAATAATGGAAGTACGGGCCGGAGTTTATAAACTATATGCATGGGTTCCTGGGTTCATCGGAGATTACGCATACGACGTCGCCGTTGATGTTACGCCGGGATGTGAGATTGAGATGGGTGAAGTTGTATATGAACCCCCAAGAGACGGTCCCACATTATGGGAAATAGGCGTTCCTGATCGATCCGCCGCAGAATTCTACGTCCCTGATCCAAATCCCATGTACATAAATAAGTTATACATAAACCACCCTCAAAGGTTTCTTCTTCTTCTTCTTCCTCGTCGCCATTACCGATCCTGCAGATTCAGACAGTATGGGCTGTGGGAAAGATACGCAGAGCTTTACCCAGATGGAGACTTGGTCTATACTGTTGGCGTCAGCGATTACTCCAAAGACTGGTTTTTTGCTCAAGTTCCAAGGAAGAAAGGGGACAATTCATTTCAGGGTACGACCTGGCAAATCAAGTTCGAGTTAGAAGAAGTAGATTCGAATGCAACTTATAAACTCAGACTGGCTCTGGCTTCTGCAACTCTGGCCGAATTACAGGTTCGAGTGAACGATCCATCGGCAAGTTCTGCTCTATTTTCGAGTGGAATAATAGGAAGAGATAACTCCATAGCCAGACATGGAGTTCATGGGCTGTACTGGCTTTTCAACGTGGAAATAGGAGGAGAGATGTTCGTTGAAGGTGATAACACAATATTTTTGACACAGCCAAAAAGTAGCAGCCCTTTCCAAGGGATTATGTATGATTACATTCGCTTAGAAGGAGAAATGGCGACGTTCGAACTATATCGGAGGTCAACTATTGGAATGTGCCTGACTGAGACTTTGGATGAAATGGTCCAGAATGGTACGCTTAGTCCCGAGCTTGCCTTCCAGGTTCTTGTCCAGTTCGACAAGTCTATGACGGAAGCACTGGAAACCCAAGTAAAGAGCAAGGTTACCATTAAGGGTCATCTCCACACATACCGATTCTGCGACAATGTTTGGACCTTTATCTTGCAAGACGCGTTGTTTAAGAACGAAGAATGCCAGGAGAATGTTGGCAGAGTCAAAATAGTGGCATGTGATTCCAAGTTACTAACACAGTAA 2274 45.07 MDNGIVQVTLSNPDGIVTGISFNGIDNLLEVLNDESNRGYFLQLLTRYMYNDINYMIKGTDFKIIVQNEEQVELSFTRSWDVSLEGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPGFNLDETRIAFKLRKDMFHYMAIADDRQRYMPLPDDRLPSRGQALAYPEAVLLLNPVEPEFKGEVDDKYQYSCDNKDLRVHGWISTDPPVGFWQITASDEFRSGGPVKQNLTSHVGPTTLANIKYNARINNVCLIQIVLCAQMFLSAHYSGLDLVPKFGSGETWKKVFGPVFIYLNSVFNGDDPFLLWDDAKLQMMMEVQSWPYSFVSSEDFPASDQRGNLRGRLLILDRYICGDCIAANGAYVGLAPPGDAGSWQRECKEYQFWTRADEEGCFSIMEVRAGVYKLYAWVPGFIGDYAYDVAVDVTPGCEIEMGEVVYEPPRDGPTLWEIGVPDRSAAEFYVPDPNPMYINKLYINHPQRFLLLLLPRRHYRSCRFRQYGLWERYAELYPDGDLVYTVGVSDYSKDWFFAQVPRKKGDNSFQGTTWQIKFELEEVDSNATYKLRLALASATLAELQVRVNDPSASSALFSSGIIGRDNSIARHGVHGLYWLFNVEIGGEMFVEGDNTIFLTQPKSSSPFQGIMYDYIRLEGEMATFELYRRSTIGMCLTETLDEMVQNGTLSPELAFQVLVQFDKSMTEALETQVKSKVTIKGHLHTYRFCDNVWTFILQDALFKNEECQENVGRVKIVACDSKLLTQ 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1127218 1133536 - Bma014574.1 Bma02g00119 77369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00119 757 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 703 753 IPR009088 GO:0005672|GO:0006367
Bma02g00119 757 Pfam Rhamnogalacturonate lyase family 1 184 IPR010325 -
Bma02g00119 757 Pfam Polysaccharide lyase family 4, domain III 445 648 IPR029411 -
Bma02g00119 757 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 655 700 IPR015872 GO:0005672|GO:0006367
Bma02g00119 757 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 652 - -
Bma02g00119 757 CDD RGL4_M 336 433 IPR029413 -
Bma02g00119 757 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 655 705 - -
Bma02g00119 757 Pfam Transcription initiation factor IIA, gamma subunit 711 752 IPR015871 GO:0005672|GO:0006367
Bma02g00119 757 CDD TFIIA_gamma_N 655 702 IPR015872 GO:0005672|GO:0006367
Bma02g00119 757 Gene3D - 6 248 IPR014718 GO:0030246
Bma02g00119 757 Pfam Polysaccharide lyase family 4, domain II 359 430 IPR029413 -
Bma02g00119 757 Gene3D - 443 649 - -
Bma02g00119 757 SUPERFAMILY Galactose-binding domain-like 442 649 IPR008979 -
Bma02g00119 757 SUPERFAMILY Starch-binding domain-like 379 428 IPR013784 GO:0030246
Bma02g00119 757 CDD RGL4_C 447 649 - -
Bma02g00119 757 CDD RGL4_N 1 303 - -
Bma02g00119 757 Gene3D - 706 756 IPR009088 GO:0005672|GO:0006367
Bma02g00119 757 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 652 - -
Bma02g00119 757 Gene3D - 654 705 IPR009083 GO:0005672|GO:0006367
Bma02g00119 757 CDD TFIIA_gamma_C 708 753 IPR015871 GO:0005672|GO:0006367
Bma02g00119 757 Gene3D - 357 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01391 Bma-Chr1:21830039 Bma02g00119 Bma-Chr2:1127218 9.34E-71 transposed
Bma04g00426 Bma-Chr4:3436560 Bma02g00119 Bma-Chr2:1127218 0 transposed
Bma07g00011 Bma-Chr7:1122208 Bma02g00119 Bma-Chr2:1127218 0 transposed
Bma01g01389 Bma-Chr1:21823098 Bma02g00119 Bma-Chr2:1127218 3.89E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00119 K18195 - qsu:112026520 984.556