Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00122 ATGGGTACACGTGGCGTAAATCTGCAGGAGCTGCTCGAAATCTTTGAAACGATCGTGGCCGTTGCAAATGATCTACGTCACTTCTCTCTGTCAAAGATACCGGTACCCCGACCTTCGGCATCAAGCCACTATATAAGTGTGTCGTTTGTTTTGCTGCAGAGAGAAGAACGGCCGGAGAGAAAGAGAGAGATGGGGAGCGAGGCGGAGATTGTGAGAAAGCCGAAGATTCTGTGTCTCCATGGATTCAGAACGAGCGGAGATATCATGAAAAAGCAAATCCAAAAGTGGCCCCAATCTGTCCTGCAAAATCTCGACCTCGTATTCCTTGACGCTCCCTTTCCGGCCGCCGGGAAATCTGAGGTCGAAGGAATCTTCGATCCTCCTTATTACGAGTGGTTCCAGTTCAACAAGGTTTTAACTCATTTCCTCTTCTGCAATTCTTCTGTACACTCGTTCATTCCTTTTGTTTCTGATTTGGATTTCAATCGACTCACAGGAATTTACAGAGTACAAGAACTTCGACGAGTGCCTCTCTTTCATCGAAGATTTCATGACTACGAAAGGACCTTTCGACGGTCTTCTCGGCTTCTCCCAGGGGGCGATTTTATCGGCGGCGCTTCCTGGTCTTCAAGCCAAGGGGGTGGCATTAACGAAAGTACCAAAAATTGA 669 47.68 MGTRGVNLQELLEIFETIVAVANDLRHFSLSKIPVPRPSASSHYISVSFVLLQREERPERKREMGSEAEIVRKPKILCLHGFRTSGDIMKKQIQKWPQSVLQNLDLVFLDAPFPAAGKSEVEGIFDPPYYEWFQFNKVLTHFLFCNSSVHSFIPFVSDLDFNRLTGIYRVQELRRVPLFHRRFHDYERTFRRSSRLLPGGDFIGGASWSSSQGGGINESTKN 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1152290 1153124 - Bma014577.2 Bma02g00122 77372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00122 222 Pfam Serine hydrolase (FSH1) 72 138 IPR005645 -
Bma02g00122 222 Gene3D alpha/beta hydrolase 70 153 IPR029058 -
Bma02g00122 222 PANTHER OVARIAN CANCER GENE-2 PROTEIN-RELATED 70 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00122 - - - mesc:110608105 142.124
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00122 Bma-Chr2:1152290 Bma09g00123 Bma-Chr9:3611577 3.66E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g475 . . . . . . . . Cmo05g00553 . . . . . . . . Bhi04g00803 Tan02g2441 . . Hepe10g0454 . Lcy13g1507 Cla08g01143 Cam08g1603 Cec08g1174 Cco08g1300 Clacu08g1302 . Cre08g1086 . . . . . . . Cme03g01830 Blo17g00105 . . Bda13g01372 . Bpe14g00474 . Bma02g00122 . . . . Cma05g00524 Car05g00474 . Cpe11g00463 . . . . . . . . . . . . . . . Lsi08g01001 Csa02g02185 Chy03g01333 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0034501 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00122 Bma_Chr02 FPKM 0.81163 1.757263 1.956041 3.802247 3.012861 3.292418 2.384074 7.950755 6.981657 6.282922