Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00125 ATGGAGAGGGTTAGTTACAGGAGGAGAAGAGATGAGGATCTGAGTCGACCACTCACGGATGCAGATTCGTCGGAAGCTGGAAATGGAGGCTGTATTCATGAAGAAAAAGAAGAAGAAGAAATCAGAGACGACGACGGACTTCCGTCGAGGATTTGGATCGAAACTAAAAAGCTTTGGAAAATCGTGGGTCCTTCCATTTTAAACCGGTTGGCTACTTTCTCCACGTTTGTCATCACCCAAGCTTTTGCAGGTCATCTCGGCGACGTTCAGTTTGCTTCTGTCTCCATTGCTTGTACCATCATTGTGGCCTTCAATTTTGGCCTTTTCTTAGGAATGGCGAGCGCTCTAGAGACGCTATGTGGGCAAGCGTTTGGGGCAAAAAGGTTTCACATGTTGGGAATATACTTACAGAGATCGTGGATAGTTCTCTTTTTCTGTGGCTTATTGATCCTACCCATTTTCATATTCGCCGCTCCGATTCTGAAACTGCTCGGACAAGCCGACGACGTGGCGGAGATGACGGGGGTGGTGGCTCTGTATCTCATCCCCCTAAACTTCAGCTTCGCCTTCCAGTTTCCATTGCAGAGGTTCTTGCAGTGCCAGCTCAAAAACGCCATTCTAGCTTGGGTTTCTCTCGGCGGTTTGATCCTCAACATCTTCTGCTGCTGGCTTTTCATCAACGTCCTGAATTTCGGAGTCATCGGAGCTGCTCTCTCTCTCGATATTTCATGGTGGTTCTTCGGATTAGGCTACTATTTTTACACCGTCTGCGGCTGCTGCCCTTTGACTTGGAATGGTTTTTCATTTGAAGCGTTTTCTGGGCTCTGGGAATTCGTCAAACTCTCTGTTGCTTCTGGGTTTATGCTCTGTTTGGAGACCTGGTATTATCGAATTCTCGTACTGCTCACAGGTCACTTGAAAAATGTCACCATCTCTGTCGATGCTTTGTCCGTTTGCAATTTGTCCTCTGAACTTGATAGAGTGAGAGTAGCAAACGAACTGGGAGCTGGGAATGGTATCTGGGGAGGAATGATTCTGGGAGGAACTGGCATTCAGACAGTGATATTAGCCATTATTACTCTAAGAACTAACTGGGAAAACGAGGTAAAAGACCAACAGTTACTCCATATTGAATCAAATGGTGGAGATTGGGTTAGAAAAACTTGGTTAGAATCTAAGAAAATGTGGCAGATTGCCGGCCCCTCCATCTTCAGCCGGCTCGCCATGTTTTCAATCACCGTCGTTACTCAATCATTCGCCGGCCACCTTGGGGACCTCGACCTCGCCGCTATTTCCGTCGGCACTACTGTTATTATCGCCATCAGCTTCGGCTTCTTGGCTGAGAATTTGGAAATTGCTAATTGGTCTATTACTCTCTCTCTCTCTCTCTATTTACCTATTTCTCTCTCTAAATTTGATAGCAAAACTAATATATGGCTCAGGTTGGAGAACTTCTACTACAGGCTATTAATCATAGTATCTGGCTATTTGCATAACGCAGAGGTTGCGGTGGATGCTCTTTCGATATGGTTATTTATAAATTTATATTGCAGCATCAGCATTTATGGATGGGAATCTATGATTCCCCTGGGATTTTTGGCTGCAACCGGCGTACGAGTAGCAAATGAACTGGGTGCTGGCAATGGTAAAGGAGCAAAGTTTGCAACCGGTATTTCGGTGATGACATCTACGATAGTCGGGCTTTTGTTTTGGTCGATTATCATGATCCAGGGTCTGTGGGGTGGAATGATCTGTGGAACTGTGATTCAAACGATCGTACTGGCGATCGTGACGATGCGTTGCGAATGGGAAGACGAGGTAAGCAGTTCATGTGAGAAAACATAA 1845 45.8 MERVSYRRRRDEDLSRPLTDADSSEAGNGGCIHEEKEEEEIRDDDGLPSRIWIETKKLWKIVGPSILNRLATFSTFVITQAFAGHLGDVQFASVSIACTIIVAFNFGLFLGMASALETLCGQAFGAKRFHMLGIYLQRSWIVLFFCGLLILPIFIFAAPILKLLGQADDVAEMTGVVALYLIPLNFSFAFQFPLQRFLQCQLKNAILAWVSLGGLILNIFCCWLFINVLNFGVIGAALSLDISWWFFGLGYYFYTVCGCCPLTWNGFSFEAFSGLWEFVKLSVASGFMLCLETWYYRILVLLTGHLKNVTISVDALSVCNLSSELDRVRVANELGAGNGIWGGMILGGTGIQTVILAIITLRTNWENEVKDQQLLHIESNGGDWVRKTWLESKKMWQIAGPSIFSRLAMFSITVVTQSFAGHLGDLDLAAISVGTTVIIAISFGFLAENLEIANWSITLSLSLYLPISLSKFDSKTNIWLRLENFYYRLLIIVSGYLHNAEVAVDALSIWLFINLYCSISIYGWESMIPLGFLAATGVRVANELGAGNGKGAKFATGISVMTSTIVGLLFWSIIMIQGLWGGMICGTVIQTIVLAIVTMRCEWEDEVSSSCEKT 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1168086 1175643 + Bma014580.1 Bma02g00125 77375

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00125 614 MobiDBLite consensus disorder prediction 1 19 - -
Bma02g00125 614 PANTHER MULTIDRUG RESISTANCE PROTEIN 338 373 - -
Bma02g00125 614 PANTHER MULTIDRUG RESISTANCE PROTEIN 576 610 - -
Bma02g00125 614 PANTHER MULTIDRUG RESISTANCE PROTEIN 473 576 - -
Bma02g00125 614 PANTHER MULTIDRUG RESISTANCE PROTEIN 39 339 - -
Bma02g00125 614 PANTHER PROTEIN DETOXIFICATION 338 373 - -
Bma02g00125 614 PANTHER PROTEIN DETOXIFICATION 39 339 - -
Bma02g00125 614 PANTHER PROTEIN DETOXIFICATION 473 576 - -
Bma02g00125 614 MobiDBLite consensus disorder prediction 1 41 - -
Bma02g00125 614 Pfam MatE 64 224 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bma02g00125 614 PANTHER PROTEIN DETOXIFICATION 382 446 - -
Bma02g00125 614 PANTHER MULTIDRUG RESISTANCE PROTEIN 382 446 - -
Bma02g00125 614 PANTHER PROTEIN DETOXIFICATION 576 610 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00125 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - jre:108980703 436.032
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00125 Bma-Chr2:1168086 Bma06g00304 Bma-Chr6:4551891 1.09E-06 dispersed
Bma15g01062 Bma-Chr15:42761549 Bma02g00125 Bma-Chr2:1168086 7.03E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1315 . . Cone20ag0535 . . . . Blo17g00107 . . Bda13g01375 . Bpe14g00469 . Bma02g00125 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000367 5 3 5 4 4 4 5 4 4 4 4 4 6 5 4 4 4 5 5 4 4 4 4 6 6 3 4 3 6 2 129
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00125 Bma_Chr02 FPKM 12.018377 10.289857 2.049009 1.989629 1.406142 1.212895 1.626744 0.490936 1.270013 0.74937