Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma02g00127 ATGTCTGCCATTTTCTCAGCGTCGTTTTCGTGCTGTTCGACCTCCCTTTTTTCCCACGAATCTCAAGCGTCAAGGCTTAGGTTCAATCGCCTTCGCGTTTCTTCAAATGAAGTCAATGTTTTGGGCAACAAGAGTGTGAGATTTATAAGCTCAAGTCCCCATGGTTATGGCGGAAGTTGCAGGAAATCAACGATGTTTAGGAATTTTAAAGTTTATAACGGGGCATCTCCAGTATCACCTCCTCCTCCTCCTAATCCCTCTCCTGGTTCTTGGAAATTCTGGATCTTGGGAGTGTTACTATCTGCCGTTTTACCCTTTTGGAAGAGCAGTTGGAACCCTCTGATGAGAATCAAGGAGAGACTGGAAACGGTGGCAGAGAGGGCGGATGAGGTGACGAACGTGATAGAGAAGGTGGCGGATGACGTGGAGAAGGTGGCGGAGGAAGTGGAGAAGGTGGCGGAAAAAGTCGCCGATCATCTTCCCGAGGGAGGAAAGCTTAAAACTGCAGCTTTATTTGTTGAAGTTGTGGCCAAGAAGACAGCCGAGGAGGCCAATGTTGCAGGAGACATCATCGACAAGGTTCAGGATGTGGTAAAGGAGGTGGAGGAATTCACTGGGAAAGACGAATCCAATAGAACCAAGGAAGCAATAGATAAGAAGCTAAAAGACATGACTAAAAATTAA 684 46.78 MSAIFSASFSCCSTSLFSHESQASRLRFNRLRVSSNEVNVLGNKSVRFISSSPHGYGGSCRKSTMFRNFKVYNGASPVSPPPPPNPSPGSWKFWILGVLLSAVLPFWKSSWNPLMRIKERLETVAERADEVTNVIEKVADDVEKVAEEVEKVAEKVADHLPEGGKLKTAALFVEVVAKKTAEEANVAGDIIDKVQDVVKEVEEFTGKDESNRTKEAIDKKLKDMTKN 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1191108 1192482 + Bma014583.1 Bma02g00127 77377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma02g00127 227 MobiDBLite consensus disorder prediction 204 227 - -
Bma02g00127 227 Coils Coil 207 227 - -
Bma02g00127 227 Coils Coil 128 155 - -
Bma02g00127 227 Gene3D - 98 226 - -
Bma02g00127 227 PANTHER PHAGE CAPSID SCAFFOLDING PROTEIN (GPO) SERINE PEPTIDASE 3 220 - -
Bma02g00127 227 PANTHER EXPRESSED PROTEIN 3 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma02g00127 - - - tcc:18592097 128.642
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma01g02599 Bma02g00127 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02599 Bma-Chr1:83625006 Bma02g00127 Bma-Chr2:1191108 5.87E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g456 . . . . Bpe02g00127 . . Bma01g02599 . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1318 . . Cone20ag0527 . . . . . . Bda11g00782 . . . . Bma02g00127 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006903 1 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma02g00127 Bma_Chr02 FPKM 2.715437 2.707813 3.362579 3.348709 5.538642 5.055306 4.92769 1.166966 0.878854 0.767794